Package Details: copasi-bin 4.44.295-1

Git Clone URL: https://aur.archlinux.org/copasi-bin.git (read-only, click to copy)
Package Base: copasi-bin
Description: COmplex PAthway SImulator for analysis of biochemical networks and their dynamics
Upstream URL: https://copasi.org
Licenses: Artistic-2.0
Submitter: micronaut
Maintainer: carlosal1015
Last Packager: carlosal1015
Votes: 2
Popularity: 0.000000
First Submitted: 2021-02-28 01:24 (UTC)
Last Updated: 2024-07-29 23:58 (UTC)

Latest Comments

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jrohwer commented on 2023-06-04 19:13 (UTC)

Checksum error with latest version again:

==> Retrieving sources...
  -> Found copasi-desktop.tar.gz
  -> Found copasi-bin-4.40.278.sh
==> Validating source files with sha512sums...
    copasi-desktop.tar.gz ... Passed
==> Validating source_x86_64 files with sha512sums...
    copasi-bin-4.40.278.sh ... FAILED
==> ERROR: One or more files did not pass the validity check!
 -> error making: copasi-bin-exit status 1
 -> Failed to install the following packages. Manual intervention is required:
copasi-bin - exit status 1

jrohwer commented on 2022-12-18 11:07 (UTC)

sha512sums still not correct. The following works for me:

diff --git a/PKGBUILD b/PKGBUILD
index 7626341..37bf4f0 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -16,8 +16,8 @@ _source=https://github.com/copasi/COPASI/releases/download/Build-$_pkgver
 source_i686=($pkgname-$pkgver.sh::$_source/COPASI-$pkgver-Linux-32bit.sh)
 source_x86_64=($pkgname-$pkgver.sh::$_source/COPASI-$pkgver-Linux-64bit.sh)
 sha512sums=('cf7172b155885db8007298643499a57421e4890b72da86f8124bc35ec30c39f17c4167cd5d4603fc37c0cf72c6e4283c009339363da1cc5f44708c08d16a2b4e')
-sha512sums_i686=('36ceeb8c6b34812a7bf32a35d7a7f17c2224f94f7b4399eacf510a2ddfed6dcf662a2a3aefc9f55fec9a18e13dcc5b412ef78c813747708f86b101b257821658')
-sha512sums_x86_64=('2ade625cc628c18b97786c2edbb5484771b55fb0b9c7a7af4312b5b78740fabd5ad2271e842bde83429dec6d37bf92e90a3fe73b813159e689128d78aefc3250')
+sha512sums_i686=('7d74ee96bd8e0174bad1b98e269d3b7fb8b55f49141169e9d7312cb6c4f153f7269b683abf6a0ab95e44f6d4d948177ba1c88104074ebd748206394ba85fcb38')
+sha512sums_x86_64=('e9ae94620fbc904f94f1efc479c64f1ff607a990ac4702b4093f3f95dce65ac6580ecec0a7a9e6660f83d4a09613eac592ad21856115ebd932d68d8935bcaac6')

 package() {
   MACHINE_TYPE=$(uname -m)

carlosal1015 commented on 2022-12-17 17:28 (UTC)

Thanks @jrohwer. The statement is true.

jrohwer commented on 2022-12-17 10:01 (UTC) (edited on 2022-12-17 10:02 (UTC) by jrohwer)

Newest release (4.38.268) sha512sums failing:

==> Validating source files with sha512sums...
    copasi-desktop.tar.gz ... Passed
==> Validating source_x86_64 files with sha512sums...
    copasi-bin-4.38.268.sh ... FAILED
==> ERROR: One or more files did not pass the validity check!

I think this may be because the 32-bit and 64-bit sources are downloaded to the same local filename by the PKGBUILD, thus overwriting each other:

source_i686=($pkgname-$pkgver.sh::$_source/COPASI-$pkgver-Linux-32bit.sh)
source_x86_64=($pkgname-$pkgver.sh::$_source/COPASI-$pkgver-Linux-64bit.sh)

carlosal1015 commented on 2022-03-16 14:23 (UTC)

I see, thanks @micronaut for clarification. Since this event, I will sent a merge request later for both packages in only one.

micronaut commented on 2022-03-16 13:50 (UTC)

sha256 validity checks always fail and I can't be bothered trying to fight with aur anymore. The batch script that Copasi ships with these days is sufficient to install Copasi, rendering this repository obsolete.

micronaut commented on 2022-03-10 13:01 (UTC) (edited on 2022-03-10 13:04 (UTC) by micronaut)

the aur 'copasi' package was not being maintained when this package was created and installs the binary release from copasi.org using their new install script.

carlosal1015 commented on 2022-03-10 12:52 (UTC)

Hi there, what is the difference between this package and https://aur.archlinux.org/packages/copasi ?

micronaut commented on 2021-06-07 09:31 (UTC)

thanks, I've updated the pkgbuild with the patch.

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