Package Details: fiji-bin 2:20240208.1017-1

Git Clone URL: https://aur.archlinux.org/fiji-bin.git (read-only, click to copy)
Package Base: fiji-bin
Description: ImageJ distribution with a lot of plugins for scientific (especially biology related) image processing.
Upstream URL: http://fiji.sc/
Licenses: GPL
Submitter: hottea
Maintainer: flomine
Last Packager: flomine
Votes: 23
Popularity: 0.78
First Submitted: 2019-11-15 07:19 (UTC)
Last Updated: 2024-02-09 17:59 (UTC)

Latest Comments

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dront78 commented on 2019-12-22 12:02 (UTC)

for some reason latest version packed as zip https://downloads.imagej.net/fiji/archive/20191220-2112/fiji-linux64.zip

user9665 commented on 2019-12-11 16:43 (UTC)

@Muflone I wasn't aware of fiji-bin. I've updated the package version. I'll request a merge to fiji-bin. This PKGBUILD either uses the lifeline version fiji-nojre-20170530 or uses the latest published in https://downloads.imagej.net/fiji/latest/fiji-nojre.zip.

Muflone commented on 2019-12-11 14:52 (UTC)

@jacopo, are you still maintaing this package? If so, given it's older than fiji-bin, do you want to rename it to fiji-bin AND update the version number to the latest available version?

Currently this package is older and with a bad name

user9665 commented on 2019-10-20 08:27 (UTC)

Do you get the menus when using other WMs? Have you also tried using the "Latest build" instead of the "Life-line"? I'm using the "Latest build" with Java 13 and it works fine here.

florosus commented on 2019-10-19 21:13 (UTC)

I can't get any of the dropdown menus (File, Edit, View etc) to open. Do I need some other package? I am running bspwm and I set Fiji to floating mode.

user9665 commented on 2019-08-17 06:53 (UTC)

Sure, no problem. Thanks.

radioxoma commented on 2019-08-16 12:01 (UTC)

Thanks, Jacopo. PKGBUILD had been updated. I don't use ImageJ/Fiji anymore and don't plan to support it. Would you like to be a maintainer?

user9665 commented on 2019-08-15 09:50 (UTC)

Minor improvement to automatically set pkgver. I'm not quite sure how a patch can be submitted here. Cheers Jacopo

diff --git a/PKGBUILD b/PKGBUILD index 4dc18c2..4abcd57 100644 --- a/PKGBUILD +++ b/PKGBUILD @@ -1,8 +1,13 @@ # Maintainer: Eugene Dvoretsky <radioxoma from gmail com> # Contributor: dreieck

+# wget -q -O tmp.html https://downloads.imagej.net/fiji/latest/ +# RELEASE_URL=cat tmp.html | grep -m 1 -o -E "https[^<>]*?fiji-nojre.zip" | head -1 +# echo $RELEASE_URL +# exit + pkgname="fiji-binary" -pkgver="20170530" +pkgver=wget -q -O - <https://downloads.imagej.net/fiji/latest/> | grep fiji-nojre.zip | sed -E 's/^.*([0-9]{4}-[0-9]{2}-[0-9]{2}).*$/\1/' | sed 's/-//g' pkgrel="1" pkgdesc="ImageJ distribution with a lot of plugins for scientific (especially biology related) image processing." arch=('i686' 'x86_64') @@ -18,10 +23,10 @@ install=fiji.install

## Life-line

-source=("https://downloads.imagej.net/fiji/Life-Line/fiji-nojre-${pkgver}.zip" +source=("https://downloads.imagej.net/fiji/latest/fiji-nojre.zip" "fiji.desktop" "fiji.install") -sha256sums=('cf9fb45c48b22a7888b479968477f1f7a300a9c833e47244cbe0d1e93890bd20' +sha256sums=('SKIP' '788a32dd0b24f482e78d5ec3209e9d5b3493a59e1da6edf82b1373e87c0320bc' '6dcc861af9328076282893ffcecc77a7fee448cec51fb7ccd51c5cece9740fa1')

@@ -54,6 +59,7 @@ build() _removefrompackage=('Contents' 'ImageJ-linux32' 'ImageJ-linux64' 'ImageJ-win32.exe' 'ImageJ-win64.exe' 'plugins/Fiji_Updater.jar' + 'plugins/imagej-updater*.jar' ) _executablebak="$(mktemp)" || exit 21 # Save the executable matching our architecture.

petecan commented on 2016-02-22 12:44 (UTC)

In my case, for getting rid of unnecessary "cannot update" messages, it is not enough to get rid of "plugins/Fiji_Updater.jar", but also of "jars/imagej-updater-0.7.8.jar". Probably we could use a glob to avoid forgetting to change the jar version. Cheers Santi

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