| Git Clone URL: | https://aur.archlinux.org/miniconda3.git (read-only, click to copy) |
|---|---|
| Package Base: | miniconda3 |
| Description: | Mini version of Anaconda Python distribution |
| Upstream URL: | https://conda.io/en/latest/miniconda |
| Keywords: | anaconda conda python |
| Licenses: | BSD-3-Clause |
| Provides: | conda |
| Submitter: | jadelord |
| Maintainer: | carlosal1015 (Rin4th) |
| Last Packager: | carlosal1015 |
| Votes: | 54 |
| Popularity: | 2.52 |
| First Submitted: | 2018-06-02 04:06 (UTC) |
| Last Updated: | 2025-03-24 14:59 (UTC) |
Hi @jadelord
The comment you mentioned seems to be an answer to a problem different from those listed here.
I just installed Manjaro and I can't install conda.
It seems that this is happening exclusively with people using Manjaro. I will post something on their forum to ask for help.
@giswqs, @lerhard Such errors could happen if you try to install miniconda3 while having a custom python environment activated (https://aur.archlinux.org/packages/anaconda/#comment-702897)
I got the following error when updating the package. Tried on two computers, both got the same error:
==> Starting package()... -> Packaging miniconda3 for installation to /opt/miniconda3 PREFIX=/var/tmp/pamac-build-user/miniconda3/pkg/miniconda3/opt/miniconda3 Unpacking payload ... [5618] mod is NULL - struct[5618] mod is NULL - pyimod02_archive[5618] mod is NULL - pyimod03_importers[5618] Failed to execute script pyiboot01_bootstrap Traceback (most recent call last): File "/tmp/build/80754af9/conda-standalone_1571943736098/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.7/struct.py", line 13, in <module> ModuleNotFoundError: No module named '_struct' Traceback (most recent call last): File "/tmp/build/80754af9/conda-standalone_1571943736098/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.7/site-packages/PyInstaller/loader/pyimod02_archive.py", line 28, in <module> ModuleNotFoundError: No module named 'struct' Traceback (most recent call last): File "/tmp/build/80754af9/conda-standalone_1571943736098/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.7/site-packages/PyInstaller/loader/pyimod03_importers.py", line 24, in <module> ModuleNotFoundError: No module named 'pyimod02_archive' Traceback (most recent call last): File "site-packages/PyInstaller/loader/pyiboot01_bootstrap.py", line 15, in <module> ModuleNotFoundError: No module named 'pyimod03_importers' [5621] Failed to execute script entry_point Traceback (most recent call last): File "entry_point.py", line 68, in <module> FileNotFoundError: [Errno 2] No such file or directory: 'pkgs' ==> ERROR: A failure occurred in package(). Aborting...
This package simply follows the pkgbuild of anaconda in AUR (https://aur.archlinux.org/packages/anaconda/). Heads up: users are discouraged to install miniconda3 as an AUR package as there is no official howto on packaging it in linux distros (https://github.com/conda/conda/issues/1235). You may be better served as just running:
curl -LO <https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh>
bash Miniconda3-latest-Linux-x86_64.sh -p /path/to/miniconda
I cannot install the package due to:
==> Starting package()... -> Packaging miniconda3 for installation to /opt/miniconda3 PREFIX=/home/lukas/.cache/yay/miniconda3/pkg/miniconda3/opt/miniconda3 Unpacking payload ... [5169] mod is NULL - structTraceback (most recent call last): File "/spare/local/nwani/pyinstaller_stuff/dev/lib/python3.6/struct.py", line 13, in <module> ModuleNotFoundError: No module named '_struct' [5169] mod is NULL - pyimod02_archiveTraceback (most recent call last): File "/spare/local/nwani/pyinstaller_stuff/dev/lib/python3.6/site-packages/PyInstaller/loader/pyimod02_archive.py", line 28, in <module> ModuleNotFoundError: No module named 'struct' [5169] mod is NULL - pyimod03_importersTraceback (most recent call last): File "/spare/local/nwani/pyinstaller_stuff/dev/lib/python3.6/site-packages/PyInstaller/loader/pyimod03_importers.py", line 24, in <module> ModuleNotFoundError: No module named 'pyimod02_archive' Traceback (most recent call last): File "site-packages/PyInstaller/loader/pyiboot01_bootstrap.py", line 15, in <module> ModuleNotFoundError: No module named 'pyimod03_importers' [5169] Failed to execute script pyiboot01_bootstrap ERROR: could not extract tar starting at offset 000000000000018891+9231072+2 ==> ERROR: A failure occurred in package(). Aborting... Error making: miniconda3
New release: 4.7.10 (2019-07-19). Please update
hidebu, Thank you ! I looked for hours and can confirm that the symbolik link workaround seems to work.
jat255, I face the same issue, and solved it by overwriting ld in compailer_compat. e.g. ln -snf /bin/ld ~/.conda/envs/py365/compiler_compat/ld
it seems binutils 2.32 is required, but ld in compailer_compat is 2.31.1. I found the hint at https://bbs.archlinux.org/viewtopic.php?id=242682
Has anyone using this package (together with PyCharm) been able to install the Cython debugging extensions in a project that is using a conda environment as the Python interpreter? The extensions compile fine when using the system-wide python, but fail when using miniconda's python. I receive the following error when trying to compile the extensions manually:
$ sudo /path/to/miniconda/python /opt/pycharm-professional/helpers/pydev/setup_cython.py build_ext --inplace
running build_ext
building '_pydevd_bundle.pydevd_cython' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/_pydevd_bundle
gcc -pthread -B /home/xxx/.conda/envs/xxx/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/xxx/.conda/envs/xxx/include/python3.6m -c _pydevd_bundle/pydevd_cython.c -o build/temp.linux-x86_64-3.6/_pydevd_bundle/pydevd_cython.o
creating build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/_pydevd_bundle
gcc -pthread -shared -B /home/xxx/.conda/envs/xxx/compiler_compat -L/home/xxx/.conda/envs/xxx/lib -Wl,-rpath=/home/xxx/.conda/envs/xxx/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/_pydevd_bundle/pydevd_cython.o -o build/lib.linux-x86_64-3.6/_pydevd_bundle/pydevd_cython.cpython-36m-x86_64-linux-gnu.so
/home/xxx/.conda/envs/xxx/compiler_compat/ld: build/temp.linux-x86_64-3.6/_pydevd_bundle/pydevd_cython.o: unable to initialize decompress status for section .debug_info
/home/xxx/.conda/envs/xxx/compiler_compat/ld: build/temp.linux-x86_64-3.6/_pydevd_bundle/pydevd_cython.o: unable to initialize decompress status for section .debug_info
/home/xxx/.conda/envs/xxx/compiler_compat/ld: build/temp.linux-x86_64-3.6/_pydevd_bundle/pydevd_cython.o: unable to initialize decompress status for section .debug_info
/home/xxx/.conda/envs/xxx/compiler_compat/ld: build/temp.linux-x86_64-3.6/_pydevd_bundle/pydevd_cython.o: unable to initialize decompress status for section .debug_info
build/temp.linux-x86_64-3.6/_pydevd_bundle/pydevd_cython.o: file not recognized: file format not recognized
collect2: error: ld returned 1 exit status
error: command 'gcc' failed with exit status 1
(x-posting this comment to the pycharm-professional AUR page)
Pinned Comments
carlosal1015 commented on 2024-07-10 02:47 (UTC)
In order to check a new version
carlosal1015 commented on 2022-05-26 20:15 (UTC) (edited on 2022-05-26 20:15 (UTC) by carlosal1015)
Important note: This is the way how to upgrade.
Suppose that we have this line in
~/.bashrcor~/.zshrcor etc.jadelord commented on 2021-02-05 09:50 (UTC) (edited on 2022-02-03 11:32 (UTC) by jadelord)
I have packaged micromamba in AUR. Try it if you are looking for a lightweight, barebones alternative to miniconda.