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Package Details: r-bsgenome 1.74.0-1
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| Git Clone URL: | https://aur.archlinux.org/r-bsgenome.git (read-only, click to copy) |
|---|---|
| Package Base: | r-bsgenome |
| Description: | Software infrastructure for efficient representation of full genomes and their SNPs |
| Upstream URL: | https://bioconductor.org/packages/BSgenome |
| Licenses: | Artistic2.0 |
| Submitter: | BioArchLinuxBot |
| Maintainer: | BioArchLinuxBot |
| Last Packager: | BioArchLinuxBot |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2022-06-05 21:26 (UTC) |
| Last Updated: | 2024-11-09 22:55 (UTC) |
Dependencies (28)
- r (r352AUR, r-mklAUR)
- r-biocgenericsAUR
- r-biocioAUR
- r-biostringsAUR
- r-genomeinfodbAUR
- r-genomicrangesAUR
- r-irangesAUR
- r-matrixstatsAUR
- r-rsamtoolsAUR
- r-rtracklayerAUR
- r-s4vectorsAUR
- r-xvectorAUR
- r-biobaseAUR (optional)
- r-biocmanagerAUR (optional)
- r-bsgenome.celegans.ucsc.ce2AUR (optional)
- r-bsgenome.hsapiens.ncbi.grch38AUR (optional)
- r-bsgenome.hsapiens.ucsc.hg38AUR (optional)
- r-bsgenome.hsapiens.ucsc.hg38.masked (optional)
- r-bsgenome.mmusculus.ucsc.mm10AUR (optional)
- r-bsgenome.rnorvegicus.ucsc.rn5 (optional)
- r-bsgenome.scerevisiae.ucsc.saccer1 (optional)
- r-bsgenomeforgeAUR (optional)
- r-hgu95av2probe (optional)
- r-runitAUR (optional)
- r-snplocs.hsapiens.dbsnp144.grch38 (optional)
- r-txdb.hsapiens.ucsc.hg38.knowngeneAUR (optional)
- r-txdb.mmusculus.ucsc.mm10.knowngeneAUR (optional)
- r-xtrasnplocs.hsapiens.dbsnp144.grch38 (optional)
Required by (145)
- r-allelicimbalance
- r-appreci8r
- r-atacseqqc
- r-atsnp
- r-bambu
- r-beat
- r-biostrings (optional)
- r-biovizbase (optional)
- r-bsgenome.celegans.ucsc.ce2
- r-bsgenome.drerio.ucsc.danrer7
- r-bsgenome.ecoli.ncbi.20080805
- r-bsgenome.hsapiens.1000genomes.hs37d5
- r-bsgenome.hsapiens.ncbi.grch38
- r-bsgenome.hsapiens.ucsc.hg18
- r-bsgenome.hsapiens.ucsc.hg19
- r-bsgenome.hsapiens.ucsc.hg38
- r-bsgenome.mmusculus.ucsc.mm10
- r-bsgenome.mmusculus.ucsc.mm9
- r-bsgenome.scerevisiae.ucsc.saccer2
- r-bsgenome.scerevisiae.ucsc.saccer3
- r-bsgenomeforge
- r-bsseq
- r-busparse
- r-cager
- r-chipanalyser
- r-chippeakanno (optional)
- r-chipseq (optional)
- r-chromvar
- r-circrnaprofiler
- r-cleanupdtseq
- r-cliprofiler
- r-crisprseek
- r-crisprseekplus
- r-deconstructsigs
- r-diffbind (optional)
- r-diffhic
- r-dpeak
- r-easyrnaseq (optional)
- r-eisar (optional)
- r-enhancerhomologsearch
- r-enrichtf
- r-esatac
- r-eventpointer
- r-exomepeak2
- r-factr (optional)
- r-fraser
- r-gcapc
- r-generegionscan (optional)
- r-genomation
- r-genomeinfodb (optional)
- r-genomicalignments (optional)
- r-genomicdistributions (optional)
- r-genomicfeatures (optional)
- r-genomicranges (optional)
- r-genvisr
- r-ggbio
- r-gmapr
- r-gothic
- r-greylistchip
- r-guideseq
- r-gviz
- r-helloranges
- r-hiannotator
- r-hicdcplus
- r-inpas
- r-isoformswitchanalyzer
- r-katdetectr
- r-m6aboost
- r-madseq
- r-mafdb.1kgenomes.phase3.hs37d5
- r-mafdb.exac.r1.0.hs37d5
- r-mafdb.exac.r1.0.nontcga.hs37d5
- r-mafdb.gnomadex.r2.1.hs37d5
- r-maftools (optional)
- r-medips
- r-metaseqr2 (optional)
- r-methrix
- r-methylseekr
- r-mirage (optional)
- r-mmdiff2
- r-monalisa
- r-motif2site
- r-motifbreakr
- r-motifmatchr
- r-msgbsr
- r-multicrispr
- r-mungesumstats
- r-musicatk
- r-mutationalpatterns
- r-nxtirfcore
- r-orfik
- r-periodicdna
- r-phastcons100way.ucsc.hg19
- r-phastcons100way.ucsc.hg38
- r-ping
- r-pipeframe
- r-plotgardener (optional)
- r-podkat
- r-proteodisco (optional)
- r-pwmenrich (optional)
- r-qdnaseq (optional)
- r-qsea
- r-quasr
- r-r453plus1toolbox
- r-raer
- r-raids
- r-rarevariantvis
- r-rcas
- r-recoup (optional)
- r-redseq
- r-regioner
- r-remp
- r-repitools
- r-resolve
- r-rgadem
- r-ribocrypt (optional)
- r-ribosomeprofilingqc
- r-rnamodr
- r-rtracklayer (optional)
- r-scmeth
- r-scope
- r-seqarchrplus
- r-signac (optional)
- r-signer
- r-sigspack
- r-singlemoleculefootprinting
- r-sitadela (optional)
- r-snplocs.hsapiens.dbsnp144.grch37
- r-snplocs.hsapiens.dbsnp150.grch38
- r-sparsesignatures
- r-spatzie
- r-spiky
- r-splicewiz
- r-tapseq
- r-tfbstools
- r-trena
- r-trnascanimport
- r-ularcirc
- r-umi4cats
- r-varcon
- r-variantannotation
- r-variantfiltering
- r-varianttools
- r-xnastring
- r-xtrasnplocs.hsapiens.dbsnp144.grch37