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Package Details: r-granie 1.8.0-1
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| Git Clone URL: | https://aur.archlinux.org/r-granie.git (read-only, click to copy) |
|---|---|
| Package Base: | r-granie |
| Description: | Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq data |
| Upstream URL: | https://bioconductor.org/packages/GRaNIE |
| Licenses: | Artistic-2.0 |
| Submitter: | pekkarr |
| Maintainer: | pekkarr (BioArchLinuxBot) |
| Last Packager: | BioArchLinuxBot |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2023-12-10 11:27 (UTC) |
| Last Updated: | 2024-05-06 18:12 (UTC) |
Dependencies (78)
- r-annotationhubAUR
- r-biomartAUR
- r-biostringsAUR
- r-checkmateAUR
- r-circlizeAUR
- r-colorspaceAUR
- r-complexheatmapAUR
- r-data.tableAUR
- r-deseq2AUR
- r-dplyrAUR
- r-ensembldbAUR
- r-forcatsAUR
- r-futile.loggerAUR
- r-genomeinfodbAUR
- r-genomicrangesAUR
- r-ggplot2AUR
- r-gridextraAUR
- r-igraphAUR
- r-limmaAUR
- r-magrittrAUR
- r-matrixstatsAUR
- r-patchworkAUR
- r-progressAUR
- r-rcolorbrewerAUR
- r-readrAUR
- r-reshape2AUR
- r-rlangAUR
- r-s4vectorsAUR
- r-scalesAUR
- r-stringrAUR
- r-summarizedexperimentAUR
- r-tibbleAUR
- r-tidyrAUR
- r-tidyselectAUR
- r-topgoAUR
- r-viridisAUR
- r-biocfilecacheAUR (optional)
- r-biocparallelAUR (optional)
- r-biocstyleAUR (optional)
- r-bsgenome.dmelanogaster.ucsc.dm6 (optional)
- r-bsgenome.hsapiens.ucsc.hg19AUR (optional)
- r-bsgenome.hsapiens.ucsc.hg38AUR (optional)
- r-bsgenome.mmulatta.ucsc.rhemac10 (optional)
- r-bsgenome.mmusculus.ucsc.mm10AUR (optional)
- r-bsgenome.mmusculus.ucsc.mm9AUR (optional)
- r-bsgenome.rnorvegicus.ucsc.rn6 (optional)
- r-bsgenome.rnorvegicus.ucsc.rn7 (optional)
- r-chipseekerAUR (optional)
- r-clusterprofilerAUR (optional)
- r-csawAUR (optional)
- r-doseAUR (optional)
- r-edaseqAUR (optional)
- r-ihwAUR (optional)
- r-jaspar2022 (optional)
- r-jaspar2024AUR (optional)
- r-knitrAUR (optional)
- r-ldlinkr (optional)
- r-motifmatchrAUR (optional)
- r-org.dm.eg.dbAUR (optional)
- r-org.hs.eg.dbAUR (optional)
- r-org.mm.eg.dbAUR (optional)
- r-org.mmu.eg.db (optional)
- r-org.rn.eg.dbAUR (optional)
- r-purrrAUR (optional)
- r-rbioapi (optional)
- r-reactomepaAUR (optional)
- r-testthatAUR (optional)
- r-tfbstoolsAUR (optional)
- r-txdb.dmelanogaster.ucsc.dm6.ensgeneAUR (optional)
- r-txdb.hsapiens.ucsc.hg19.knowngeneAUR (optional)
- r-txdb.hsapiens.ucsc.hg38.knowngeneAUR (optional)
- r-txdb.mmulatta.ucsc.rhemac10.refgene (optional)
- r-txdb.mmusculus.ucsc.mm10.knowngeneAUR (optional)
- r-txdb.mmusculus.ucsc.mm9.knowngeneAUR (optional)
- r-txdb.rnorvegicus.ucsc.rn6.refgene (optional)
- r-txdb.rnorvegicus.ucsc.rn7.refgene (optional)
- r-variancepartitionAUR (optional)
- r-wgcnaAUR (optional)