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Package Details: r-summarizedexperiment 1.36.0-1
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| Git Clone URL: | https://aur.archlinux.org/r-summarizedexperiment.git (read-only, click to copy) |
|---|---|
| Package Base: | r-summarizedexperiment |
| Description: | SummarizedExperiment container |
| Upstream URL: | https://bioconductor.org/packages/release/bioc/html/SummarizedExperiment.html |
| Licenses: | Artistic2.0 |
| Submitter: | greyltc |
| Maintainer: | greyltc (peippo) |
| Last Packager: | peippo |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2019-02-09 14:59 (UTC) |
| Last Updated: | 2024-11-14 13:49 (UTC) |
Dependencies (27)
- r (r352AUR, r-mklAUR)
- r-biobaseAUR
- r-biocgenericsAUR
- r-delayedarrayAUR
- r-genomeinfodbAUR
- r-genomicrangesAUR
- r-irangesAUR
- r-matrixgenericsAUR
- r-s4arraysAUR
- r-s4vectorsAUR
- r-airwayAUR (optional)
- r-annotateAUR (optional)
- r-annotationdbiAUR (optional)
- r-biocstyleAUR (optional)
- r-digestAUR (optional)
- r-genomicfeaturesAUR (optional)
- r-hdf5arrayAUR (optional)
- r-hgu95av2.dbAUR (optional)
- r-jsonliteAUR (optional)
- r-knitrAUR (optional)
- Show 7 more dependencies...
Required by (625)
- r-adam
- r-adimpute
- r-affixcan
- r-aggregatebiovar
- r-airpart
- r-airway
- r-alabaster.mae (optional)
- r-alabaster.se
- r-aldex2
- r-allelicimbalance
- r-alpine
- r-alpsnmr (optional)
- r-ancombc
- r-animalcules
- r-annotationhub (optional)
- r-anota2seq
- r-apalyzer
- r-apeglm
- r-apl
- r-appreci8r
- r-asics
- r-asurat
- r-atacseqtfea
- r-atena
- r-aucell
- r-autonomics
- r-awst
- r-bambu
- r-barcodetrackr
- r-basics
- r-basicstan
- r-batchelor
- r-batchqc
- r-bayesspace
- r-baynorm
- r-bbcanalyzer
- r-bdmmacorrect
- r-beer
- r-benchdamic
- r-bigpint
- r-bindingsitefinder (optional)
- r-biobroom (optional)
- r-bioconcotk
- r-biocpkgtools (optional)
- r-biocsklearn
- r-bionero
- r-bioplex
- r-biosigner
- r-biotmle
- r-biovizbase
- r-biscuiteer
- r-biseq
- r-blacksheepr
- r-bloodgen3module
- r-bnbc
- r-brainsaber
- r-brgenomics
- r-bsseq
- r-bumhmm
- r-buscorrect
- r-busseq
- r-cadra
- r-caen
- r-caen (optional)
- r-cagefightr
- r-cageminer (optional)
- r-cager
- r-catalyst
- r-cbea
- r-cbioportaldata
- r-ccfindr
- r-ccimpute
- r-cdi
- r-celaref
- r-celda
- r-celldex
- r-cellid
- r-cellmixs
- r-cellscore
- r-celltrails
- r-censcyt
- r-cepo
- r-cetf
- r-chetah
- r-chippeakanno
- r-chromscape
- r-chromvar
- r-citefuse
- r-clusterexperiment
- r-clustifyr
- r-clustree (optional)
- r-cmapr
- r-cnvfilter
- r-cnvranger
- r-coexnet
- r-cogaps
- r-comapr
- r-combi
- r-compartmap
- r-conclus
- r-condiments
- r-conos (optional)
- r-consensusde
- r-consica
- r-copynumberplots
- r-coregx
- r-corral
- r-coseq
- r-cosmic.67
- r-countsimqc
- r-csaw
- r-cssq
- r-ctdata (optional)
- r-ctggem
- r-ctsv
- r-curatedtcgadata
- r-cydar
- r-cytofpower
- r-cytofqc
- r-cytokernel
- r-cytomapper
- r-cytoviewer
- r-damefinder
- r-damirseq
- r-dasper
- r-dcanr (optional)
- r-dce (optional)
- r-dearseq (optional)
- r-debcam
- r-debrowser
- r-deco
- r-decomplexdisease
- r-decomptumor2sig
- r-decontx
- r-decoupler (optional)
- r-deepsnv
- r-deformats
- r-degreport
- r-delayedarray (optional)
- r-delocal
- r-deltacapturec
- r-demixt
- r-demuxsnp
- r-dep
- r-descan2
- r-deseq2
- r-despace
- r-destiny
- r-dewseq
- r-dexseq
- r-diffbind
- r-diffcoexp
- r-diffcyt
- r-differentialregulation
- r-diffhic
- r-diffutr
- r-dino
- r-discorhythm
- r-distinct
- r-dittoseq
- r-divergence
- r-dmcfb
- r-dmchmm
- r-dmrcate
- r-dominoeffect
- r-doppelgangr
- r-dorothea (optional)
- r-doser
- r-dreamlet
- r-dropletutils
- r-dune
- r-easier (optional)
- r-easierdata
- r-easyrnaseq
- r-edger (optional)
- r-eisar
- r-elmer
- r-enmcb (optional)
- r-enmix
- r-enrichmentbrowser
- r-ensemblvep
- r-epialleler
- r-epigenomix
- r-epigrahmm
- r-epimix
- r-epimutacions
- r-epistack
- r-epivizr (optional)
- r-epivizrchart (optional)
- r-epivizrdata
- r-erma
- r-escape
- r-escher
- r-esetvis (optional)
- r-evaluomer
- r-eventpointer
- r-ewce
- r-exomepeak2
- r-experimentsubset
- r-expressionatlas
- r-extrachips
- r-fcbf
- r-fcscan
- r-feast
- r-featseekr
- r-findit2
- r-fishpond
- r-fission
- r-flames
- r-fobitools (optional)
- r-fraser
- r-fusesom
- r-gars
- r-gcrisprtools
- r-gdnax
- r-gdr (optional)
- r-gdrcore
- r-gdrimport
- r-gdrtestdata (optional)
- r-gdrutils
- r-gemma.r
- r-genetonic
- r-genie3 (optional)
- r-genogam
- r-genomicalignments
- r-genomicfiles
- r-genomicinstability
- r-genomicranges (optional)
- r-genomicsupersignature
- r-geotcgadata
- r-getdee2
- r-ggbio
- r-ggsc
- r-ggspavis
- r-glimma
- r-glmgampoi
- r-glmsparsenet
- r-globalseq (optional)
- r-gnet2
- r-gramm4r
- r-granie
- r-greylistchip
- r-grmetrics
- r-gscreend
- r-gseabenchmarker
- r-gsean (optional)
- r-gsva
- r-gwasurvivr
- r-gwena
- r-harmonizr
- r-hca (optional)
- r-hdf5array (optional)
- r-helloranges
- r-hermes
- r-heron
- r-hicdoc
- r-hicontacts
- r-hipathia
- r-hoodscanr
- r-hpip (optional)
- r-htseqgenie
- r-humantranscriptomecompendium
- r-hummingbird
- r-iasva
- r-icetea
- r-ideal
- r-ifaa
- r-iggeneusage
- r-iloreg
- r-imcrtools
- r-inetgrate
- r-infercnv
- r-informeasure (optional)
- r-inspect
- r-intad
- r-interactionset
- r-interactivecomplexheatmap (optional)
- r-interactivedisplay (optional)
- r-interest
- r-interminer
- r-intomics
- r-isee
- r-iseede
- r-iseehex
- r-iseehub
- r-iseeindex
- r-iseepathways
- r-iseeu
- r-islet
- r-isobayes
- r-isoformswitchanalyzer
- r-isomirs
- r-iteremoval
- r-ivygapse
- r-lace
- r-lefser
- r-lemur
- r-lineagepulse
- r-lineagespot
- r-lionessr
- r-lipidr
- r-lisaclust
- r-loomexperiment
- r-macarron
- r-made4
- r-madseq
- r-mai
- r-mariner
- r-marr
- r-mast
- r-mastr
- r-matrixgenerics (optional)
- r-matrixqcvis
- r-mbased
- r-mbkmeans
- r-mbqn
- r-mcsea
- r-meal
- r-meat
- r-meb
- r-metaboannotation
- r-metabolomicsworkbenchr
- r-metaneighbor
- r-metaseqr2
- r-methreg
- r-methrix
- r-methylaid
- r-methylpipe
- r-methylscaper
- r-methylumi
- r-metnet
- r-mia
- r-miasim
- r-miaviz
- r-microbiotaprocess
- r-microstasis (optional)
- r-micsqtl
- r-midashla
- r-milor
- r-minfi
- r-minimumdistance
- r-mirlab
- r-mirmine
- r-mirsm
- r-missmethyl
- r-mlinterfaces
- r-mlseq
- r-moanin
- r-mofa2 (optional)
- r-monalisa
- r-moonlightr
- r-motifbreakr
- r-motifmatchr
- r-mpra
- r-mpranalyze
- r-msexperiment
- r-msfeatures
- r-msgbsr
- r-msnbase (optional)
- r-msprep
- r-msqrob2
- r-mudata
- r-multiassayexperiment
- r-multidataset
- r-multiomicsviz
- r-multirnaflow
- r-multiwgcna
- r-mumosa
- r-muscat
- r-musicatk
- r-mwastools
- r-nadfinder
- r-nanomethviz
- r-nbamseq
- r-nebulosa
- r-netactivity
- r-netsmooth
- r-newwave
- r-nipalsmcia
- r-nnsvg
- r-norce
- r-normalyzerde
- r-nxtirfcore
- r-oder (optional)
- r-oligoclasses
- r-omicrexposome
- r-omicsprint
- r-omicsviewer
- r-oncomix
- r-ontoproc
- r-orfik
- r-orthos
- r-orthosdata
- r-outrider
- r-oveseg
- r-padma
- r-pairadise
- r-pairedgsea
- r-pairkat
- r-pathwaypca (optional)
- r-pcaexplorer
- r-pdatk
- r-peco
- r-pharmacogx
- r-phemd
- r-phenomis
- r-phenopath
- r-philr (optional)
- r-phipdata
- r-phosr
- r-pipecomp
- r-pmp
- r-podkat (optional)
- r-poma
- r-powsc
- r-proactiv
- r-proda
- r-profileplyr
- r-prolocdata (check)
- r-prolocdata (optional)
- r-psichomics
- r-psmatch (optional)
- r-pubscore (optional)
- r-pulsedsilac
- r-purecn
- r-qfeatures
- r-qmtools
- r-qsmooth
- r-qsvar
- r-qtlexperiment
- r-quantiseqr
- r-r453plus1toolbox
- r-radiogx
- r-raer
- r-raggedexperiment
- r-rarevariantvis
- r-rcistarget
- r-receptloss
- r-recount
- r-recount3
- r-regenrich
- r-regionalst
- r-regionreport
- r-regsplice
- r-remp
- r-restfulse
- r-restfulsedata
- r-rgsepd
- r-riboprofiling (optional)
- r-rifi
- r-rificomparative
- r-rmmquant
- r-rnaagecalc
- r-rnasense
- r-rnaseqsamplesize
- r-roar
- r-rocpai
- r-rolde
- r-ropls
- r-rqt
- r-rscudo
- r-rtcgatoolbox
- r-rtn
- r-runibic
- r-rvisdiff (optional)
- r-s4vectors (optional)
- r-saturn
- r-sbgnview
- r-sbgnview.data (optional)
- r-sc3
- r-scale4c
- r-scannotatr
- r-scarray
- r-scarray.sat
- r-scater
- r-scbfa
- r-sccb2
- r-scclassifr
- r-scdblfinder
- r-scdd
- r-scddboost
- r-scdesign3
- r-scds
- r-scfeaturefilter (optional)
- r-scgps
- r-schot
- r-scider
- r-scmap
- r-scmerge
- r-scmet
- r-scmeth
- r-scnorm
- r-scone
- r-scoreinvhap
- r-scp
- r-scpipe
- r-scran
- r-screclassify
- r-screencounter
- r-screpertoire
- r-scrnaseq
- r-scruff
- r-scry
- r-sctensor
- r-sctgif
- r-sctreeviz
- r-scuttle
- r-scvir
- r-sdams
- r-sechm
- r-segmenter
- r-semisup (optional)
- r-seqcat
- r-seqgate
- r-sesame
- r-setools
- r-seurat (optional)
- r-sgcp
- r-sgseq
- r-sigfeature
- r-signac (optional)
- r-signaturesearch
- r-signifinder
- r-sigspack
- r-simpleseg
- r-singlecellexperiment
- r-singlecelltk
- r-singler
- r-singscore
- r-slalom
- r-slingshot
- r-slinky
- r-snapcount
- r-snphood
- r-soggi
- r-spaniel
- r-sparrow (optional)
- r-spasim
- r-spatialcpie
- r-spatialde
- r-spatialexperiment
- r-spatialfeatureexperiment
- r-spatialheatmap
- r-spatiallibd
- r-spatzie
- r-spiat
- r-spicyr
- r-splatter
- r-splicewiz
- r-splicingfactory
- r-spotclean
- r-spotlight (optional)
- r-spqn
- r-sracipe
- r-srnadiff
- r-ssnappy
- r-sspaths
- r-stager
- r-standr
- r-statial
- r-stjoincount
- r-struct
- r-structuralvariantannotation
- r-summarizedbenchmark
- r-supersigs
- r-survtype
- r-svanumt (optional)
- r-svaretro (optional)
- r-svmdo
- r-switchde
- r-systempiper
- r-systempipeshiny (optional)
- r-systempipetools
- r-tbsignatureprofiler
- r-tcgabiolinks
- r-tcgabiolinksgui
- r-tcgautils
- r-tcseq
- r-tenxio
- r-tenxplore
- r-tfutils (optional)
- r-tidybulk
- r-tidydr (optional)
- r-tidysinglecellexperiment
- r-tidysummarizedexperiment
- r-timeseriesexperiment
- r-tissueenrich
- r-tnbc.cms
- r-toast
- r-tomoda
- r-toxicogx
- r-tradeseq
- r-trajectoryutils
- r-transformgampoi
- r-trare
- r-traviz
- r-treesummarizedexperiment
- r-treg
- r-trendy
- r-tricycle
- r-tscan
- r-tscr
- r-tsrchitect
- r-ttmap
- r-tvtb
- r-tximeta
- r-ucell
- r-umi4cats
- r-updateobject (optional)
- r-vaexprs
- r-vanillaice
- r-variantannotation
- r-variantexperiment
- r-variantfiltering
- r-vdjdive
- r-velociraptor
- r-vidger
- r-voyager
- r-weitrix
- r-wpm
- r-xcms
- r-yamss
- r-zellkonverter
- r-zfpkm
- r-zinbwave
Latest Comments
dviktor commented on 2022-01-18 20:07 (UTC)
I'm leaving maintenance and support for this package in favor of new repository. You can install pre-built packages from my repo