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Package Details: r-xml 3.99.0.18-1
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Git Clone URL: | https://aur.archlinux.org/r-xml.git (read-only, click to copy) |
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Package Base: | r-xml |
Description: | Tools for Parsing and Generating XML Within R and S-Plus |
Upstream URL: | https://cran.r-project.org/package=XML |
Licenses: | BSD-3-Clause |
Submitter: | fordprefect |
Maintainer: | pekkarr (BioArchLinuxBot) |
Last Packager: | BioArchLinuxBot |
Votes: | 1 |
Popularity: | 0.000321 |
First Submitted: | 2020-04-26 15:25 (UTC) |
Last Updated: | 2025-01-02 00:01 (UTC) |
Dependencies (4)
- libxml2 (libxml2-gitAUR, libxml2-2.9AUR)
- r (r-mklAUR)
- r-bitopsAUR (optional)
- r-rcurlAUR (optional)
Required by (117)
- gcdkit
- gcdkit (optional)
- r-affycompatible
- r-animalcules
- r-annotate
- r-annotationforge
- r-annotationhubdata
- r-arrayqualitymetrics
- r-arules (optional)
- r-autonomics (optional)
- r-basecallqc
- r-bioassayr
- r-biocancer
- r-biocviews
- r-biodb
- r-biodbncbi
- r-biomartr
- r-bionet (optional)
- r-boolnet
- r-cellnoptr
- r-chronos
- r-codedepends
- r-crossmeta
- r-customcmpdb
- r-cytoml
- r-daglogo (optional)
- r-deepbluer
- r-dismo (optional)
- r-dplr
- r-envisionquery
- r-expressionatlas
- r-factr
- r-fgnet
- r-flowsom
- r-flowutils
- r-flowworkspace
- r-gatom
- r-gdcrnatools
- r-gdnainrnaseqdata
- r-gdrimport
- r-geneanswers
- r-genenetworkbuilder
- r-genomicscores
- r-geoexplorer
- r-gep2pep
- r-ggkegg
- r-gladiatox
- r-graph (optional)
- r-gridsvg
- r-grimport
- r-gseabase
- r-hmdbquery
- r-htmltable (optional)
- r-interactivedisplay
- r-interminer
- r-isobar (optional)
- r-kegggraph
- r-kegglincs
- r-keggprofile
- r-knowseq
- r-metaboliteidmapping (optional)
- r-mlr
- r-motifstack
- r-msnbase (optional)
- r-multimir
- r-mzid
- r-mzr (optional)
- r-nanotator
- r-openprimer
- r-opossom
- r-orfik
- r-partykit (optional)
- r-pathostat
- r-pathview
- r-paxtoolsr
- r-peakpanther
- r-pepxmltab
- r-phantasus
- r-precisiontrialdrawer
- r-prostar
- r-psichomics
- r-qdaptools
- r-rbgl (optional)
- r-rbiopaxparser
- r-rcurl (optional)
- r-rcy3
- r-rebook (optional)
- r-rentrez
- r-reportingtools
- r-restfulr
- r-rgalaxy
- r-rgeos (optional)
- r-rgraphviz (optional)
- r-rlist
- r-rmassbank
- r-rnbeads (optional)
- r-rnexml
- r-rpsixml
- r-rsdmx
- r-rtcga
- r-rtracklayer
- r-runit (optional)
- r-rwikipathways
- r-savr
- r-sbmlr
- r-selectr (optional)
- r-semplot
- r-sparql
- r-svgpanzoom (optional)
- r-svunit (optional)
- r-tcgabiolinks
- r-terra (optional)
- r-tfbstools
- r-tracktables
- r-varfrompdb
- r-xcms (optional)
- r-xml2r
Latest Comments
pekkarr commented on 2024-01-24 14:07 (UTC)
Thanks for the report! This is fixed in
3.99.0.16.1-2
. CRAN had changed the source archive without bumping the package version, which is why the checksums didn't match.zhushazang commented on 2024-01-24 13:07 (UTC)
Unable to upgrade r-xml package:
`:: 1 package to upgrade/install. 1 aur/r-xml 3.99.0.16-3 -> 3.99.0.16.1-1 ==> Packages to exclude: (eg: "1 2 3", "1-3", "^4" or repo name) -> Excluding packages may cause partial upgrades and break systems ==> AUR Explicit (1): r-xml-3.99.0.16.1-1 :: PKGBUILD up to date, skipping download: r-xml ==> Making package: r-xml 3.99.0.16.1-1 (Wed 24 Jan 2024 09:06:52 AM -04) ==> Retrieving sources... -> Downloading XML_3.99-0.16.1.tar.gz... % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 949k 100 949k 0 0 347k 0 0:00:02 0:00:02 --:--:-- 347k ==> WARNING: Skipping verification of source file PGP signatures. ==> Validating source files with md5sums... XML_3.99-0.16.1.tar.gz ... FAILED ==> ERROR: One or more files did not pass the validity check! -> error downloading sources: /home/rodolfo/.cache/yay/r-xml context: exit status 1
:: (1/1) Parsing SRCINFO: r-xml ==> Making package: r-xml 3.99.0.16.1-1 (Wed 24 Jan 2024 09:06:56 AM -04) ==> Checking runtime dependencies... ==> Checking buildtime dependencies... ==> Retrieving sources... -> Found XML_3.99-0.16.1.tar.gz ==> Validating source files with md5sums... XML_3.99-0.16.1.tar.gz ... FAILED ==> ERROR: One or more files did not pass the validity check! -> error making: r-xml-exit status 1 -> Failed to install the following packages. Manual intervention is required: r-xml - exit status 1 Packages to keep: All locally installed packages `
Regards
pekkarr commented on 2023-12-02 15:42 (UTC)
Compilation fails due to changes to libxml2:
See this BioArchLinux patch for how to fix it.
japhir commented on 2021-01-28 12:19 (UTC)
makes it work! :)