Package Details: silo 4.11.1-1

Git Clone URL: https://aur.archlinux.org/silo.git (read-only, click to copy)
Package Base: silo
Description: A Mesh and Field I/O Library and Scientific Database
Upstream URL: http://software.llnl.gov/Silo
Licenses: BSD
Submitter: jedbrown
Maintainer: carlosal1015
Last Packager: a.kudelin
Votes: 7
Popularity: 0.000000
First Submitted: 2009-02-13 15:59 (UTC)
Last Updated: 2023-10-21 20:23 (UTC)

Latest Comments

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carlosal1015 commented on 2023-07-23 18:57 (UTC)

Thank you very much, it works again.

Maleki commented on 2019-09-06 09:44 (UTC)

Hi,

I have been trying to install silo on Ubuntu 18.04.3 LTS but rocket test fails. After doing make all from silo directory, I got the following notice:

NOTICE: Silo test cases are not compiled by default. To compile and test NOTICE: them run "make check" from the silo "tests" directory. Otherwise NOTICE: you can compile them individually with "make TESTNAME". The test NOTICE: names are: array, dir, extface, multi_test, partial_io, point, NOTICE: quad, simple, ucd, ucdsamp3, testall, obj, onehex, oneprism, NOTICE: onepyramid, onetet, subhex, TestReadMask, twohex, multispec, sami, NOTICE: specmix, spec, cpz1plt, group_test, listtypes, alltypes, wave, NOTICE: multi_file, polyzl, csg, rocket, mmadjacency, largefile, version, NOTICE: namescheme, efcentering, mk_nasf_pdb, ioperf, arbpoly2d, readstuff, NOTICE: mat3d_3across, merge_block, empty, majorder, realloc_obj_and_opts, NOTICE: arrayf77, arrayf90, curvef77, matf77, pointf77, quadf77, ucdf77, NOTICE: testallf77, csgmesh, but "testall" is a good one to start with.

With make check, the test fails. I could compile and test the cases individually except rocket which fails. Below is the last part of the error message:

./array:1948:103: error: stray ‘\340’ in program ./array:1948:104: error: stray ‘\357’ in program ./array:1948:105: error: stray ‘\377’ in program ./array:1948:106: error: stray ‘\377’ in program ./array:1948:108: error: stray ‘\307’ in program ./array:1948:110: error: unterminated comment In file included from /usr/include/c++/7/tuple:39:0, from /usr/include/c++/7/bits/stl_map.h:63, from /usr/include/c++/7/map:61, from rocket.cxx:66: ./array:1:2: error: ‘ELF’ does not name a type; did you mean ‘EOF’? ELF?? > ? < @ Ѐ @ 8 @ ? ? ? ? @ @ @ �? �? ? 8 8 8 ? ? ? ? �{- �{- ? ? T T T D D ? P�td? ?� ?� ?� D? D? ? Q�td? �{- �{- x? x? ? /lib64/ld-linux-x86-64.so.2 ? ? ? GNU ? ? GNU ��zl�?}���[P�)|!����? ? ? 0 ? � ? � ? '? ? � ? � ? T? ? t ? b? ? �? ? �? ? � ? �? ? �? ? n? ? 5 ? 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H��tLH���, H��H? H�E�H���, H��H? H�?H���, H��H? H�}� t?H�E�H���z|��H�E� H�E��� H�E��h � H����}��H���, H��t?H�?��, H�E�H��H���.� ���, ��t_H�0�, H��H? H��tLH�?�, H��H? H�E�H� �, H��H? H�?H���, H��H? H�}� t?H�E�H����{��H�E� H�E���UH��H�}�H�}� t?H�E��@?��t� ��? ]�UH��H��@H� ^ Makefile:1623: recipe for target 'rocket-rocket.o' failed make[1]: [rocket-rocket.o] Error 1 make[1]: Leaving directory '/home/badjana/parflow/silo/tests' Makefile:1777: recipe for target 'check-am' failed make: [check-am] Error 2

Please is there any solution to fix this?

Thanks in advance.

tomislavski commented on 2018-06-12 11:40 (UTC) (edited on 2018-06-12 11:51 (UTC) by tomislavski)

Hi, my build fails in the "rocket test":

33: rocket FAILED (testsuite.at:186)

Is there something I can do to fix this?

Test log cutout:

----------------------
Detailed failed tests.
----------------------
-- compilation --
  1. testsuite.at:185: testing rocket ... ./testsuite.at:186: $VALGRIND rocket $STARGS --- /dev/null 2018-06-11 20:00:06.976780266 +0200 +++ /home/tomislav/aur/silo/src/silo-4.10.2/tests/testsuite.dir/at-groups/33/stderr 2018-06-12 13:43:45.401144480 +0200 @@ -0,0 +1,3 @@ +terminate called after throwing an instance of 'std::length_error'
  2. what(): basic_string::append +/home/tomislav/aur/silo/src/silo-4.10.2/tests/testsuite.dir/at-groups/33/test-source: line 23: 3303 Aborted (core dumped) $VALGRIND rocket $STARGS stdout: Using "../../.libs" as plugin dir. Found 1 format writers. Processing format "silo"... ./testsuite.at:186: exit code was 134, expected 0
  3. testsuite.at:185: 33. rocket (testsuite.at:185): FAILED (testsuite.at:186)

Compilation warnings for "rocket":

rocket.cxx:55:2: warning: #warning MAKE THIS CONDITIONAL LATER [-Wcpp] #warning MAKE THIS CONDITIONAL LATER ^~~~~~~ rocket.cxx:155:1: warning: deprecated conversion from string constant to ‘char’ [-Wwrite-strings] }; ^ rocket.cxx:155:1: warning: deprecated conversion from string constant to ‘char’ [-Wwrite-strings] rocket.cxx:155:1: warning: deprecated conversion from string constant to ‘char’ [-Wwrite-strings] rocket.cxx:155:1: warning: deprecated conversion from string constant to ‘char’ [-Wwrite-strings] rocket.cxx:155:1: warning: deprecated conversion from string constant to ‘char’ [-Wwrite-strings] rocket.cxx: In function ‘int WriteAllFormats(int, char)’: rocket.cxx:744:57: warning: deprecated conversion from string constant to ‘char’ [-Wwrite-strings] char dirs[] = {".", "../..", ".libs", "../../.libs"}; ^ rocket.cxx:744:57: warning: deprecated conversion from string constant to ‘char’ [-Wwrite-strings] rocket.cxx:744:57: warning: deprecated conversion from string constant to ‘char’ [-Wwrite-strings] rocket.cxx:744:57: warning: deprecated conversion from string constant to ‘char’ [-Wwrite-strings] mv -f .deps/rocket-rocket.Tpo .deps/rocket-rocket.Po

pychuang commented on 2018-04-23 17:45 (UTC) (edited on 2018-04-23 18:07 (UTC) by pychuang)

[Update] OK, I found the problem is on my side: a previous admin installed f77 on my machine. And nowadays not many people have f77 in their system, so this shouldn't happen to most users. But I'll keep the original message just in case.

[Original message] Not sure why, but I had to set F77=gfortran in order to build some Fortran 77 tests. Without using gfortran, it will try to use f77 as Fortran 77 compiler, and some compilations failed.

For example, the following compilation was executed when doing make check in the check() section of PKGBUILD:

f77 -I./../src/silo -I./../src/silo -I/usr/include -g -c -o arrayf77.o arrayf77.f

And it produced the following error:

arrayf77.f:
   MAIN main:
Cannot open file silo.inc

After using gfortran as the Fortran 77 compiler, everything worked fine.

eolianoe commented on 2017-03-05 13:19 (UTC)

@v8areu: I'm sorry but I'm unable to reproduce your issue. Do you have any special configuration linked to gfortran?

v8areu commented on 2017-03-05 03:36 (UTC) (edited on 2017-03-05 03:38 (UTC) by v8areu)

Hello, I got an error while building the package from 'makepkg -sri' command. Here are the following build and error message: https://gist.github.com/v8areu/824ca1164aefc2d989ed4e1a8572c5bb Thank you. I have both the latest gcc and gcc-fortran from official package. I don't know why I got an error "checking whether we are using the GNU Fortran compiler... no"

eolianoe commented on 2016-09-22 14:53 (UTC)

@muon, @MartinDiehl: I was able to reproduce the bug but randomly... As proposed by @fallenrgh, downgrading to c++98 seems to fix the problem, but I do not know why... Let me know if you still have some errors.