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pkgbase = bio-tbtools
pkgdesc = GUI/CommandLine Tool Box for biologistists to utilize NGS data. \ https://doi.org/10.1016/j.molp.2023.09.010
pkgver = 2.224
pkgrel = 1
epoch = 1
url = https://github.com/CJ-Chen/TBtools-II
arch = x86_64
license = unknown
makedepends = unzip
makedepends = gendesk
depends = java-runtime>=11
depends = bash
optdepends = blast+: BLAST support
optdepends = diamond: quick blast(needed in quick MCScanx scan) support
optdepends = mcscanx: collinear scan support
optdepends = hmmer: HMM Search support
optdepends = muscle: align support
optdepends = trimal: large scale align support
optdepends = iqtree: maximum likelihood phylogenomic tree support
optdepends = kaks_calculator: kaks calculate support
source = https://github.com/CJ-Chen/TBtools-II/releases/download/2.224/TBtools_JRE1.6.jar
sha256sums = f2c9d93f9dcb29a6c1ebbcdc006e22d43245f9ed200b0949d65d00a0b2eed266
pkgname = bio-tbtools
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