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pkgbase = qtl-seq
pkgdesc = Pipeline for bulk segregant analysis. https://doi.org/10.7717/peerj.13170
pkgver = 2.2.8
pkgrel = 1
url = https://github.com/YuSugihara/QTL-seq
arch = x86_64
license = GPL
makedepends = python-setuptools
makedepends = cython
makedepends = python-setuptools-scm
depends = bwa
depends = samtools
depends = snpeff
depends = bcftools
depends = trimmomatic
depends = python-matplotlib
depends = python-numpy
depends = python-pandas
depends = python-seaborn
optdepends = mutmap: identify causative mutations responsible for phenotype
options = !emptydirs
source = QTL-seq-2.2.8::https://github.com/YuSugihara/QTL-seq/archive/refs/tags/v2.2.8.tar.gz
sha256sums = fe4fd97a50a2240d60987f4c7dc67db2dee23654a5ec34bd08e30108a0ed1bdc
pkgname = qtl-seq
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