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pkgbase = scanpy
pkgdesc = Single-Cell Analysis in Python
pkgver = 1.10.3
pkgrel = 1
url = https://github.com/theislab/scanpy
arch = any
license = BSD
makedepends = python-hatch
makedepends = python-hatch-vcs
makedepends = python-build
makedepends = python-installer
makedepends = python-wheel
depends = python-anndata>=0.8
depends = python-numpy>=1.23
depends = python-matplotlib>=3.6
depends = python-pandas>=1.5
depends = python-scipy>=1.8
depends = python-seaborn>=0.13
depends = python-h5py>=3.1
depends = python-tqdm
depends = python-scikit-learn>=0.24
depends = python-statsmodels>=0.13
depends = python-patsy
depends = python-networkx>=2.7
depends = python-natsort
depends = python-joblib
depends = python-numba>=0.56
depends = python-umap-learn>=0.5.1
depends = python-pynndescent>=0.5.13
depends = python-packaging>=21.3
depends = python-session-info
depends = python-legacy-api-wrap>=1.4
optdepends = python-igraph: PAGA support (also transitively needed for Louvain/Leiden)
optdepends = python-louvain-igraph: Louvain clustering
optdepends = python-leidenalg: leiden community detection
optdepends = python-bbknn: Batch balanced KNN (batch correction)
optdepends = python-rapids: GPU-driven calculation of neighbors
optdepends = python-magic-impute: MAGIC imputation method
optdepends = python-skmisc: For seurat_v3 highly_variable_genes method
optdepends = python-harmonypy: Harmony dataset integration algorithm
optdepends = python-scanorama: Scanorama dataset integration algorithm
optdepends = python-scikit-image: Cell doublet detection with scrublet
optdepends = rapids-cudf: NVIDIA RAPIDS acceleration
optdepends = rapids-cuml: NVIDIA RAPIDS acceleration
optdepends = rapids-cugraph: NVIDIA RAPIDS acceleration
optdepends = python-dask: Dask parallelization
provides = scanpy
provides = python-scanpy
source = https://files.pythonhosted.org/packages/source/s/scanpy/scanpy-1.10.3.tar.gz
sha256sums = 0a644d8fa173ac1c62aed4255de7031bf7501c7ad4441cf6ce99cd638b32f880
pkgname = scanpy
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