summarylogtreecommitdiffstats
path: root/.SRCINFO
blob: 1c8e154d134e1b3e4a0f0f95fa0214840fab38e5 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
pkgbase = scanpy
	pkgdesc = Single-Cell Analysis in Python
	pkgver = 1.10.3
	pkgrel = 1
	url = https://github.com/theislab/scanpy
	arch = any
	license = BSD
	makedepends = python-hatch
	makedepends = python-hatch-vcs
	makedepends = python-build
	makedepends = python-installer
	makedepends = python-wheel
	depends = python-anndata>=0.8
	depends = python-numpy>=1.23
	depends = python-matplotlib>=3.6
	depends = python-pandas>=1.5
	depends = python-scipy>=1.8
	depends = python-seaborn>=0.13
	depends = python-h5py>=3.1
	depends = python-tqdm
	depends = python-scikit-learn>=0.24
	depends = python-statsmodels>=0.13
	depends = python-patsy
	depends = python-networkx>=2.7
	depends = python-natsort
	depends = python-joblib
	depends = python-numba>=0.56
	depends = python-umap-learn>=0.5.1
	depends = python-pynndescent>=0.5.13
	depends = python-packaging>=21.3
	depends = python-session-info
	depends = python-legacy-api-wrap>=1.4
	optdepends = python-igraph: PAGA support (also transitively needed for Louvain/Leiden)
	optdepends = python-louvain-igraph: Louvain clustering
	optdepends = python-leidenalg: leiden community detection
	optdepends = python-bbknn: Batch balanced KNN (batch correction)
	optdepends = python-rapids: GPU-driven calculation of neighbors
	optdepends = python-magic-impute: MAGIC imputation method
	optdepends = python-skmisc: For seurat_v3 highly_variable_genes method
	optdepends = python-harmonypy: Harmony dataset integration algorithm
	optdepends = python-scanorama: Scanorama dataset integration algorithm
	optdepends = python-scikit-image: Cell doublet detection with scrublet
	optdepends = rapids-cudf: NVIDIA RAPIDS acceleration
	optdepends = rapids-cuml: NVIDIA RAPIDS acceleration
	optdepends = rapids-cugraph: NVIDIA RAPIDS acceleration
	optdepends = python-dask: Dask parallelization
	provides = scanpy
	provides = python-scanpy
	source = https://files.pythonhosted.org/packages/source/s/scanpy/scanpy-1.10.3.tar.gz
	sha256sums = 0a644d8fa173ac1c62aed4255de7031bf7501c7ad4441cf6ce99cd638b32f880

pkgname = scanpy