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# Maintainer: Vitalii Kuzhdin <vitaliikuzhdin@gmail.com>
# Contributor: Alexander Kobel <a-kobel@a-kobel.de>
pkgbase="bertini"
pkgname=("${pkgbase}-"{common,serial,parallel})
pkgver=1.6
pkgrel=5
pkgdesc="Homotopy continuation solver for systems of polynomial equations"
arch=('x86_64' 'i686')
url="https://bertini.nd.edu"
license=('custom:Bertini License')
makedepends=('glibc' 'gmp' 'mpfr' 'openmpi')
_pkgsrc="${pkgbase}-${pkgver}"
source=("${_pkgsrc}.tar.gz::${url}/BertiniSource_v${pkgver}.tar.gz"
"MANUAL.pdf::${url}/BertiniUsersManual.pdf"
"${pkgbase}.sh")
sha256sums=('0bc4c5f0b057366500fc62b37526af116cadb7dcc190ca454e0ebe00a8998998'
'017313464d162bb32640858faa0dc40ec8498eee439cb703dc22507baa15394f'
'f55f838946e4ab2ee73cb87cb3111989cfa9b9f6c4fcea2c0dd00a9e4d0c0db5')
prepare() {
cd "${srcdir}"
rm -rf "${_pkgsrc}"
mkdir -p "${_pkgsrc}"
mv "BertiniSource_v${pkgver//./}"/* "${_pkgsrc}"
rm -rf "BertiniSource_v${pkgver//./}"
cd "${_pkgsrc}"
# workaround for OpenMPI 4 compatibility
find . -type f -exec sed -e s/MPI_Address/MPI_Get_address/ \
-e s/MPI_Type_struct/MPI_Type_create_struct/ \
-i {} +
}
build() {
cd "${srcdir}/${_pkgsrc}"
libtoolize
autoreconf -vfi
autoupdate
./configure \
--prefix='/usr' \
--includedir="/usr/include/${pkgbase}"
make
}
package_bertini-common() {
pkgdesc+=" (common files and documentation)"
arch=('any')
depends=('sh')
cd "${srcdir}"
install -vDm755 "${pkgbase}.sh" "${pkgdir}/usr/bin/${pkgbase}"
install -vDm644 "MANUAL.pdf" "${pkgdir}/usr/share/doc/${pkgbase}/MANUAL.pdf"
cd "${_pkgsrc}"
find "include" -type f -exec install -vDm644 "{}" "${pkgdir}/usr/{}" \;
install -vDm644 "README" "${pkgdir}/usr/share/doc/${pkgbase}/README"
# install -vDm644 "NEWS" "${pkgdir}/usr/share/doc/${pkgbase}/NEWS"
# install -vDm644 "CHANGELOG" "${pkgdir}/usr/share/doc/${pkgbase}/CHANGELOG"
install -vDm644 "AUTHORS" "${pkgdir}/usr/share/doc/${pkgbase}/AUTHORS"
install -vDm644 "COPYING" "${pkgdir}/usr/share/licenses/${pkgbase}/COPYING"
}
package_bertini-serial() {
pkgdesc+=" (serial version)"
depends=('bertini-common' 'glibc' 'gmp' 'mpfr')
provides=("${pkgbase}" "lib${pkgname}.so")
cd "${srcdir}/${_pkgsrc}"
make DESTDIR="${pkgdir}" install
cd "${pkgdir}/usr"
rm -rf include
cd "${pkgdir}/usr/bin"
rm -f *parallel* bertini
cd "${pkgdir}/usr/lib"
rm -f *parallel*
}
package_bertini-parallel() {
pkgdesc+=" (parallel version with OpenMPI)"
depends=('bertini-common' 'glibc' 'gmp' 'mpfr' 'openmpi')
provides=("${pkgbase}" "lib${pkgname}.so")
cd "${srcdir}/${_pkgsrc}"
make DESTDIR="${pkgdir}" install
cd "${pkgdir}/usr"
rm -rf include
cd "${pkgdir}/usr/bin"
rm -f *serial* bertini
cd "${pkgdir}/usr/lib"
rm -f *serial*
}
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