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# Maintainer: Martino Pilia <martino.pilia@gmail.com>
pkgname=elastix
pkgver=5.1.0
pkgrel=1
pkgdesc='Toolbox for rigid and nonrigid registration of images'
arch=('x86_64')
url='https://github.com/SuperElastix/elastix'
license=('apache')
provides=()
depends=(
'ann'
'eigen'
'insight-toolkit>=5.3.0'
'openjpeg2'
)
makedepends=('cmake')
optdepends=()
conflicts=('elastix-git' 'elastix-bin')
source=("${url}/archive/${pkgver}.tar.gz")
sha256sums=('f2e3e33359d1e35cb986bc1eb7a1b0179cdb20a67e410ac8423102a160bfc29e')
prepare() {
cd "${srcdir}/${pkgname}-${pkgver}"
cmake \
. \
-B build \
-DCMAKE_INSTALL_PREFIX:PATH="/usr" \
-DCMAKE_BUILD_TYPE:STRING=Release \
-DCMAKE_CXX_FLAGS:STRING="--std=c++14" \
-DBUILD_TESTING:BOOL=OFF \
-DELASTIX_IMAGE_2D_PIXELTYPES:STRING="unsigned char;short;float" \
-DELASTIX_IMAGE_3D_PIXELTYPES:STRING="unsigned char;short;float" \
-DELASTIX_IMAGE_4D_PIXELTYPES:STRING="unsigned char;short;float" \
-DELASTIX_IMAGE_DIMENSIONS:STRING="2;3;4" \
-DELASTIX_USER_COMPONENT_DIRS:PATH="" \
-DELASTIX_USE_OPENCL:BOOL=OFF \
-DELASTIX_USE_OPENMP:BOOL=ON \
-DELASTIX_USE_EIGEN:BOOL=OFF \
-DUSE_ALL_COMPONENTS:BOOL=OFF \
-DUSE_AdaGrad:BOOL=ON \
-DUSE_AdaptiveStochasticGradientDescent:BOOL=ON \
-DUSE_AdaptiveStochasticLBFGS:BOOL=ON \
-DUSE_AdaptiveStochasticVarianceReducedGradient:BOOL=ON \
-DUSE_AdvancedAffineTransformElastix:BOOL=ON \
-DUSE_AdvancedBSplineTransform:BOOL=ON \
-DUSE_AdvancedKappaStatisticMetric:BOOL=OFF \
-DUSE_AdvancedMattesMutualInformationMetric:BOOL=ON \
-DUSE_AdvancedMeanSquaresMetric:BOOL=ON \
-DUSE_AdvancedNormalizedCorrelationMetric:BOOL=ON \
-DUSE_AffineDTITransformElastix:BOOL=OFF \
-DUSE_AffineLogStackTransform:BOOL=ON \
-DUSE_AffineLogTransformElastix:BOOL=OFF \
-DUSE_BSplineInterpolator:BOOL=ON \
-DUSE_BSplineInterpolatorFloat:BOOL=OFF \
-DUSE_BSplineResampleInterpolator:BOOL=ON \
-DUSE_BSplineResampleInterpolatorFloat:BOOL=OFF \
-DUSE_BSplineStackTransform:BOOL=ON \
-DUSE_BSplineTransformWithDiffusion:BOOL=OFF \
-DUSE_CMAEvolutionStrategy:BOOL=OFF \
-DUSE_ConjugateGradient:BOOL=ON \
-DUSE_ConjugateGradientFRPR:BOOL=OFF \
-DUSE_CorrespondingPointsEuclideanDistanceMetric:BOOL=ON \
-DUSE_DeformationFieldTransform:BOOL=ON \
-DUSE_DisplacementMagnitudePenalty:BOOL=OFF \
-DUSE_DistancePreservingRigidityPenalty:BOOL=ON \
-DUSE_EulerStackTransform:BOOL=ON \
-DUSE_EulerTransformElastix:BOOL=ON \
-DUSE_FiniteDifferenceGradientDescent:BOOL=ON \
-DUSE_FixedGenericPyramid:BOOL=ON \
-DUSE_FixedRecursivePyramid:BOOL=ON \
-DUSE_FixedShrinkingPyramid:BOOL=OFF \
-DUSE_FixedSmoothingPyramid:BOOL=ON \
-DUSE_FullSampler:BOOL=ON \
-DUSE_FullSearch:BOOL=ON \
-DUSE_GradientDifferenceMetric:BOOL=OFF \
-DUSE_GridSampler:BOOL=ON \
-DUSE_KNNGraphAlphaMutualInformationMetric:BOOL=ON \
-DUSE_LinearInterpolator:BOOL=ON \
-DUSE_LinearResampleInterpolator:BOOL=OFF \
-DUSE_MissingStructurePenalty:BOOL=OFF \
-DUSE_MovingGenericPyramid:BOOL=ON \
-DUSE_MovingRecursivePyramid:BOOL=ON \
-DUSE_MovingShrinkingPyramid:BOOL=OFF \
-DUSE_MovingSmoothingPyramid:BOOL=ON \
-DUSE_MultiBSplineTransformWithNormal:BOOL=OFF \
-DUSE_MultiInputRandomCoordinateSampler:BOOL=ON \
-DUSE_MultiMetricMultiResolutionRegistration:BOOL=ON \
-DUSE_MultiResolutionRegistration:BOOL=ON \
-DUSE_MultiResolutionRegistrationWithFeatures:BOOL=ON \
-DUSE_MyStandardResampler:BOOL=ON \
-DUSE_NearestNeighborInterpolator:BOOL=OFF \
-DUSE_NearestNeighborResampleInterpolator:BOOL=OFF \
-DUSE_NormalizedGradientCorrelationMetric:BOOL=OFF \
-DUSE_NormalizedMutualInformationMetric:BOOL=ON \
-DUSE_OpenCLFixedGenericPyramid:BOOL=OFF \
-DUSE_OpenCLMovingGenericPyramid:BOOL=OFF \
-DUSE_OpenCLResampler:BOOL=OFF \
-DUSE_PCAMetric:BOOL=ON \
-DUSE_PCAMetric2:BOOL=ON \
-DUSE_PatternIntensityMetric:BOOL=OFF \
-DUSE_PolydataDummyPenalty:BOOL=OFF \
-DUSE_Powell:BOOL=ON \
-DUSE_PreconditionedGradientDescent:BOOL=OFF \
-DUSE_PreconditionedStochasticGradientDescent:BOOL=ON \
-DUSE_QuasiNewtonLBFGS:BOOL=ON \
-DUSE_RSGDEachParameterApart:BOOL=OFF \
-DUSE_RandomCoordinateSampler:BOOL=ON \
-DUSE_RandomSampler:BOOL=ON \
-DUSE_RandomSamplerSparseMask:BOOL=ON \
-DUSE_RayCastInterpolator:BOOL=OFF \
-DUSE_RayCastResampleInterpolator:BOOL=OFF \
-DUSE_RecursiveBSplineTransform:BOOL=ON \
-DUSE_ReducedDimensionBSplineInterpolator:BOOL=ON \
-DUSE_ReducedDimensionBSplineResampleInterpolator:BOOL=ON \
-DUSE_RegularStepGradientDescent:BOOL=ON \
-DUSE_SimilarityTransformElastix:BOOL=OFF \
-DUSE_Simplex:BOOL=OFF \
-DUSE_SimultaneousPerturbation:BOOL=OFF \
-DUSE_SplineKernelTransform:BOOL=ON \
-DUSE_StandardGradientDescent:BOOL=ON \
-DUSE_StatisticalShapePenalty:BOOL=OFF \
-DUSE_SumOfPairwiseCorrelationCoefficientsMetric:BOOL=ON \
-DUSE_SumSquaredTissueVolumeDifferenceMetric:BOOL=ON \
-DUSE_TransformBendingEnergyPenalty:BOOL=ON \
-DUSE_TransformRigidityPenalty:BOOL=ON \
-DUSE_TranslationStackTransform:BOOL=ON \
-DUSE_TranslationTransformElastix:BOOL=ON \
-DUSE_VarianceOverLastDimensionMetric:BOOL=ON \
-DUSE_WeightedCombinationTransformElastix:BOOL=OFF
}
build() {
cd "${srcdir}/${pkgname}-${pkgver}"
cmake --build build
}
package() {
cd "${srcdir}/${pkgname}-${pkgver}"
DESTDIR="$pkgdir/" cmake --install build
cd "${srcdir}/${pkgname}-${pkgver}"
install -D -m644 \
"LICENSE" \
"$pkgdir/usr/share/licenses/$pkgname/LICENSE"
install -D -m644 \
"NOTICE" \
"$pkgdir/usr/share/licenses/$pkgname/NOTICE"
}
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