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# Maintainer: Luis Martinez <luis dot martinez at disroot dot org>
pkgname=python-codon-adaptation-index
pkgver=1.0.2
pkgrel=2
pkgdesc="Implementation of the codon adaptation index"
arch=('any')
url="https://github.com/benjamin-lee/codonadaptationindex"
license=('MIT')
depends=('python-biopython' 'python-click' 'python-scipy')
makedepends=(
'python-sphinx'
'python-sphinxcontrib-programoutput'
'python-setuptools'
'python-build'
'python-installer'
'python-wheel'
'python-pytest-runner')
checkdepends=('python-pytest')
provides=('python-CAI')
source=("$pkgname-$pkgver.tar.gz::$url/archive/v$pkgver.tar.gz")
sha256sums=('1ab778e6f9b7a00f0cbaedeb4324609ae78627a2ee19a5c97cd80a964824636e')
prepare() {
cd "CodonAdaptationIndex-$pkgver"
sed -i '/use_2to3/d' setup.py
}
build() {
cd "CodonAdaptationIndex-$pkgver"
export PYTHONPATH="$PWD"
python -m build --wheel --no-isolation
cd docs
make man
}
check() {
cd "CodonAdaptationIndex-$pkgver"
pytest -x --disable-warnings
}
package() {
export PYTHONHASHSEED=0
cd "CodonAdaptationIndex-$pkgver"
python -m installer --destdir="$pkgdir/" dist/*.whl
install -Dm644 LICENSE.txt "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
install -Dm644 paper/paper.{md,bib} -t "$pkgdir/usr/share/doc/$pkgname/"
install -Dm644 docs/_build/man/cai.1 -t "$pkgdir/usr/share/man/man1/"
}
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