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# Maintainer: Astro Benzene <universebenzene at sina dot com>
pkgbase=python-photutils
_pyname=${pkgbase#python-}
pkgname=("python-${_pyname}" "python-${_pyname}-doc")
pkgver=2.0.2
#_pkgver=${pkgver/.0}
pkgrel=1
pkgdesc="Astropy Affiliated package for image photometry utilities"
arch=('i686' 'x86_64')
url="http://photutils.readthedocs.io"
license=('BSD-3-Clause')
makedepends=('cython>=3.0.0'
'python-setuptools-scm>=6.2'
'python-wheel'
'python-build'
'python-installer'
'python-extension-helpers>=1'
'python-numpy>=2.0.0'
'python-sphinx-astropy'
'python-pydata-sphinx-theme'
'python-sphinx-copybutton'
'python-sphinx-design'
'python-matplotlib'
'python-astropy'
'python-rasterio'
'python-scipy'
'python-scikit-image'
'python-shapely'
'graphviz')
checkdepends=('python-pytest-astropy-header'
'python-pytest-doctestplus'
'python-pytest-remotedata'
# 'python-pytest-xdist'
'python-bottleneck'
'python-regions'
'python-gwcs') # scipy matplotlib <- scikit-image shapely rasterio already in makedepends
source=("https://files.pythonhosted.org/packages/source/${_pyname:0:1}/${_pyname}/${_pyname}-${pkgver}.tar.gz")
#source=("https://github.com/astropy/photutils/releases/download/${pkgver}/${_pyname}-${pkgver}.tar.gz")
#source=("https://files.pythonhosted.org/packages/source/${_pyname:0:1}/${_pyname}/${_pyname}-${_pkgver}.tar.gz")
# "https://github.com/astropy/photutils-datasets/raw/main/data/M6707HH.fits"
# "https://github.com/astropy/photutils-datasets/raw/main/data/SA112-SF1-001R1.fit.gz"
# "https://github.com/astropy/photutils-datasets/raw/main/data/SA112-SF1-ra-dec-list.txt"
# "https://github.com/astropy/photutils-datasets/raw/main/data/hst_wfc3ir_f160w_simulated_starfield.fits"
# "https://github.com/astropy/photutils-datasets/raw/main/data/irac_ch1_flight.fits"
# "https://github.com/astropy/photutils-datasets/raw/main/data/irac_ch2_flight.fits"
# "https://github.com/astropy/photutils-datasets/raw/main/data/irac_ch3_flight.fits"
# "https://github.com/astropy/photutils-datasets/raw/main/data/irac_ch4_flight.fits"
# "https://github.com/astropy/photutils-datasets/raw/main/data/spitzer_example_catalog.xml"
# "https://github.com/astropy/photutils-datasets/raw/main/data/spitzer_example_image.fits"
# 'datasets-use-local.patch')
md5sums=('8185da749187ccee58057bca04ec6500')
get_pyver() {
python -c "import sys; print('$1'.join(map(str, sys.version_info[:2])))"
}
#prepare() {
# cd ${srcdir}/${_pyname}-${pkgver}
# cd ${srcdir}/${_pyname}-${_pkgver}
#
# sed -e "/bool8/a \ ignore:jsonschema.exceptions.RefResolutionError is deprecated:DeprecationWarning" \
# -i setup.cfg
# install -Dm644 "${srcdir}"/{*.fit*,*.txt,*.xml} -t ${_pyname}/datasets/data
# patch -Np1 -i "${srcdir}/datasets-use-local.patch"
#}
build() {
cd ${srcdir}/${_pyname}-${pkgver}
# cd ${srcdir}/${_pyname}-${_pkgver}
python -m build --wheel --no-isolation #--skip-dependency-check
msg "Building Docs"
ln -rs ${srcdir}/${_pyname}-${pkgver}/${_pyname/-/_}*egg-info \
build/lib.linux-${CARCH}-cpython-$(get_pyver)/${_pyname/-/_}-${pkgver}-py$(get_pyver .).egg-info
PYTHONPATH="../build/lib.linux-${CARCH}-cpython-$(get_pyver)" make -C docs html
}
check() {
cd ${srcdir}/${_pyname}-${pkgver}
# cd ${srcdir}/${_pyname}-${_pkgver}
pytest "build/lib.linux-${CARCH}-cpython-$(get_pyver)" || warning "Tests failed" # -vv -l -ra --color=yes -o console_output_style=count --remote-data=any -p xdist -n 4
}
package_python-photutils() {
depends=('python>=3.10' 'python-numpy>=1.24' 'python-astropy>=5.3' 'python-scipy>=1.10')
optdepends=('python-scikit-image>=0.20: Required to deblend segmented sources'
'python-matplotlib>=3.7: To power a variety of plotting features (e.g. plotting apertures)'
'python-gwcs>=0.19: Required in make_gwcs to create a simple celestial gwcs object.'
'python-bottleneck: Improves the performance of sigma clipping and other functionality that may require computing statistics on arrays with NaN values'
'python-tqdm: Required to display optional progress bars'
'python-rasterio: Required to convert source segments into polygon objects'
'python-regions>=0.9: Required to perform aperture photometry using region objects'
'python-shapely: Required to convert source segments into polygon objects'
'python-photutils-doc: Documentation for python-photutils')
cd ${srcdir}/${_pyname}-${pkgver}
# cd ${srcdir}/${_pyname}-${_pkgver}
install -D -m644 LICENSE.rst -t "${pkgdir}/usr/share/licenses/${pkgname}"
install -D -m644 README.rst -t "${pkgdir}/usr/share/doc/${pkgname}"
python -m installer --destdir="${pkgdir}" dist/*.whl
}
package_python-photutils-doc() {
pkgdesc="Documentation for Python Photutils module"
arch=('any')
cd ${srcdir}/${_pyname}-${pkgver}/docs/_build
# cd ${srcdir}/${_pyname}-${_pkgver}/docs/_build
install -D -m644 -t "${pkgdir}/usr/share/licenses/${pkgname}" ../../LICENSE.rst
install -d -m755 "${pkgdir}/usr/share/doc/${pkgbase}"
cp -a html "${pkgdir}/usr/share/doc/${pkgbase}"
}
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