PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=a4Preproc
_pkgver=1.56.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Automated Affymetrix Array Analysis Preprocessing Package"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  r-biobase
  r-biocgenerics
)
optdepends=(
  r-all
  r-hgu95av2.db
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('852bce8bd675751bdbcd3334a84ed3e5')
b2sums=('35f7daf65256c26b5efd8650e355a2b810e0d61029d1348294b7cf76405596192bf0660cbbf5dd968eb81ef8154c3c2bf9dd97fc8c0348fe8297c2b473f028a9')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}