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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=affxparser
_pkgver=1.80.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Affymetrix File Parsing SDK"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('LGPL-2.0-or-later')
depends=(
r
)
optdepends=(
r-affymetrixdatatestfiles
r-r.oo
r-r.utils
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
"fix-makevars.patch")
md5sums=('eba5541bda99ed2bbc5883ba092a03b2'
'3003f5b61fc426c2f977e4cd277e9f44')
b2sums=('7775e780ad8cc5d142e7a9f4fc6eb7f8df523e941df3fa6de0823e24091ec64925e4d202a266549f393febebff6114458a4bca378d642b01065a01f7edf0d283'
'263668f9ca395d380a7a2a2ed048cc33fd63418546fde998271504ab04fa2a8589d31a07de3f9470919455631fa77cb68bfdfa553164508bcf9c293a87d233e2')
prepare() {
# fix optimization level and race condition
patch -Np1 -i fix-makevars.patch
}
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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