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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=ATACCoGAPS
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Analysis Tools for scATACseq Data with CoGAPS"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.mmusculus.ucsc.mm10
r-chromvar
r-cogaps
r-dplyr
r-fgsea
r-geneoverlap
r-genomicfeatures
r-genomicranges
r-gplots
r-gtools
r-homo.sapiens
r-iranges
r-jaspar2016
r-motifmatchr
r-msigdbr
r-mus.musculus
r-projectr
r-rgreat
r-stringr
r-tfbstools
r-tidyverse
)
optdepends=(
r-knitr
r-viridis
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('17f4e21080e0488fab86b4fc5b2e6b15')
b2sums=('3bffcdf48133209b2245a070f297b2c43f725e881f5d01ff972087507b1fd4f5ce7c14327f5591c71770837c1f9241c62167af7614008bcf766cbe6fe3634b8c')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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