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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=autonomics
_pkgver=1.14.9
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc='Unified Statistical Modeling of Omics Data'
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-abind
r-biocfilecache
r-biocgenerics
r-bit64
r-codingmatrices
r-colorspace
r-data.table
r-dplyr
r-edger
r-ggforce
r-ggplot2
r-ggrepel
r-gridextra
r-limma
r-magrittr
r-matrixstats
r-multiassayexperiment
r-r.utils
r-rcolorbrewer
r-readxl
r-rlang
r-s4vectors
r-scales
r-stringi
r-summarizedexperiment
r-tidyr
r-tidyselect
r-vsn
)
optdepends=(
r-biobase
r-e1071
r-patchwork
r-affy
r-annotationdbi
r-annotationhub
r-apcluster
r-biocmanager
r-biocstyle
r-biostrings
r-dbi
r-diagram
r-ensembldb
r-genomicdatacommons
r-genomicranges
r-geoquery
r-hgu95av2.db
r-icsnp
r-jsonlite
r-knitr
r-lme4
r-lmertest
r-mixomics
r-mpm
r-olinkanalyze
r-org.hs.eg.db
r-org.mm.eg.db
r-pcamethods
r-pheatmap
r-progeny
r-propagate
r-rcurl
r-readods
r-remotes
r-rmarkdown
r-ropls
r-rsqlite
r-rsubread
r-rtracklayer
r-statmod
r-survminer
r-testthat
r-uniprot.ws
r-writexl
r-xml
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('a96f0d7aec7e57cabce980db286a5c64')
b2sums=('07a6d80a6d95b8ad568edb3b11961391eafbde318d195d797d9f5a0e5811776cf8e9e0e925f2644213304d45863f915cf0c3043c1ee723c39073de4307e31041')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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