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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=bambu
_pkgver=3.6.0
pkgname=r-${_pkgname,,}
pkgver=3.6.0
pkgrel=1
pkgdesc='Reference-guided isoform reconstruction and quantification for long read RNA-Seq data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-biocparallel
r-data.table
r-dplyr
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-iranges
r-rcpp
r-rcpparmadillo
r-rsamtools
r-s4vectors
r-summarizedexperiment
r-tidyr
r-xgboost
r-bsgenome
)
optdepends=(
r-annotationdbi
r-apeglm
r-biocfilecache
r-biostrings
r-bsgenome.hsapiens.ncbi.grch38
r-circlize
r-complexheatmap
r-deseq2
r-dexseq
r-experimenthub
r-ggbio
r-ggplot2
r-gridextra
r-knitr
r-nanoporernaseq
r-parallel
r-purrr
r-rmarkdown
r-testthat
r-txdb.hsapiens.ucsc.hg38.knowngene
r-utils
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('bc7043c8950f12daf095f340b83c50b55dc3163c26a0e57e07f6b26dc951c6de')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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