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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=bandle
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="An R package for the Bayesian analysis of differential subcellular localisation experiments"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
blas
lapack
r-biobase
r-biocparallel
r-biocstyle
r-circlize
r-dplyr
r-ggalluvial
r-ggplot2
r-ggrepel
r-knitr
r-lbfgs
r-msnbase
r-plyr
r-proloc
r-prolocdata
r-rcpp
r-rlang
r-robustbase
r-s4vectors
r-tidyr
)
makedepends=(
r-bh
r-rcpparmadillo
)
checkdepends=(
r-testthat
)
optdepends=(
r-coda
r-fields
r-interp
r-pheatmap
r-rmarkdown
r-spelling
r-testthat
r-viridis
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('b9b2e7b766d268691f9e7bc45b5fb2d8')
b2sums=('2e8602874294d28ee422c124b14586fdba0cf698172dd4c95c1fe50e4aa86220988f1a6b5fa62d63ecfc28fa342f006fe87a12c1f0ade56d32206d7342d886ab')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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