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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=BASiCStan
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Stan implementation of BASiCS"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
onetbb
r-basics
r-glmgampoi
r-rcpp
r-rcppparallel
r-rstan
r-rstantools
r-scran
r-scuttle
r-singlecellexperiment
r-summarizedexperiment
)
makedepends=(
r-bh
r-rcppeigen
r-stanheaders
)
checkdepends=(
r-testthat
)
optdepends=(
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('5525d5dc42ee9564bcde9f4b1e594cdb')
b2sums=('6284991bd0ae29f630e7963288f1398dfbbba416cd7adea00c2605b83c7965cc4857965d773af2bd69e9596c34fd662913b25f2c95ba9afb9f406c3126f93d49')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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