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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=BASiCStan
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Stan implementation of BASiCS"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
onetbb
r-basics
r-glmgampoi
r-rcpp
r-rcppparallel
r-rstan
r-rstantools
r-scran
r-scuttle
r-singlecellexperiment
r-summarizedexperiment
)
makedepends=(
r-bh
r-rcppeigen
r-stanheaders
)
checkdepends=(
r-testthat
)
optdepends=(
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('a4186cc4e1dc5ff03d112a63c06acc09')
b2sums=('b3b865d3919351252c690627f39d04cea64bc04005955bac41c854e2f212df3a6b0f742716f6c69699bd079c3cbf1280155a0b3100a6e128809dec8e51cf7e4e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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