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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=BatchQC
_pkgver=2.0.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Batch Effects Quality Control Software"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-data.table
r-deseq2
r-dplyr
r-ebseq
r-ggdendro
r-ggnewscale
r-ggplot2
r-limma
r-matrixstats
r-pheatmap
r-rcolorbrewer
r-reader
r-reshape2
r-scran
r-shiny
r-summarizedexperiment
r-sva
r-tibble
r-tidyr
r-tidyverse
)
optdepends=(
r-biocmanager
r-biocstyle
r-bladderbatch
r-dendextend
r-devtools
r-knitr
r-lintr
r-plotly
r-rmarkdown
r-shinythemes
r-spelling
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('775f7f746c2ada89c20ff78bb6faa103')
b2sums=('3efff6f48d3a655cb32c4341d6cbb0a10b73560692bfaf6d2a5def765822a480a66be54d734d0c7702a4b430673e9b886e881851c7a4f7fde306917fc71f3d33')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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