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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=beer
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Bayesian Enrichment Estimation in R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
jags
r-biocparallel
r-cli
r-edger
r-phipdata
r-progressr
r-rjags
r-summarizedexperiment
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-dplyr
r-ggplot2
r-knitr
r-rmarkdown
r-spelling
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e2b2b44d638bb6b8a99e37fcdfe0bc67')
b2sums=('99b3c9968be7b91183b8a0f73d3cbb63d5d83b5b4a4af9c8ea9a23ecfa3fea8f0bc82d1175005fbb4246767fff9c3b5318761622c275e0643f4343661033ea1e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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