PKGBUILD


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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>

_pkgname=BG2
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Performs Bayesian GWAS analysis for non-Gaussian data using BG2"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  r-caret
  r-ga
  r-memoise
)
optdepends=(
  r-biocstyle
  r-formatr
  r-knitr
  r-rmarkdown
  r-rrblup
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('9676112992c1f1a21f62d31bae00303b')
b2sums=('dedc8eb10f2ed115ebcbf2e165952b0472aa7c9b85a7a86330703d896cf84d9e5cdf134ddb9bcd81d7f43b4fb555516ae6156eca484b235d66aa0cfe29f33e73')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}