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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=BioCartaImage
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="BioCarta Pathway Images"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-magick
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-ragg
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('4f26abfd0edf32cd79345d0652e58cdf')
b2sums=('8e789e838876cfce9962cd58e375110f196ed2b5620150d4a055c1139ba12c49bba843d680b2cd12a02c9a3f97de9a31e6a0b77d1546abb2fc3162420c45c126')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla test-all.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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