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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=borealis
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biobase
r-bsseq
r-cowplot
r-doparallel
r-dplyr
r-dss
r-foreach
r-gamlss
r-gamlss.dist
r-genomicranges
r-ggplot2
r-plyr
r-purrr
r-r.utils
r-rlang
r-snow
)
checkdepends=(
r-biocgenerics
r-runit
)
optdepends=(
r-annotatr
r-biocgenerics
r-biocstyle
r-knitr
r-org.hs.eg.db
r-rmarkdown
r-runit
r-tidyr
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('284017a6199bf885961cfe4a246bb7fc')
b2sums=('38409d982328f31fe7c7054269323b96845d3f7d2c01181062f620d85f84dc416d529e838cb67fa8a4b8b51e5596384d30ec4cb7edc49c577d479096b342d985')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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