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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=CellBarcode
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Cellular DNA Barcode Analysis toolkit"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biostrings
r-ckmeans.1d.dp
r-data.table
r-egg
r-ggplot2
r-magrittr
r-plyr
r-rcpp
r-rsamtools
r-s4vectors
r-seqinr
r-shortread
r-stringr
r-zlibbioc
)
makedepends=(
r-bh
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('033800efd6a20b732a66ea8993054ca6')
b2sums=('983928f68e209c274f468853f9eb23a7478e32c568a438098056ea9a60d3ecdaf5b22f4ee9080db6eda34333a28c88d2d7d6a71ca2044c959fbc83acb4d7f131')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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