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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=chromswitch
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=1.22.0
pkgrel=3
pkgdesc='An R package to detect chromatin state switches from epigenomic data'
arch=('any')
url="https://bioconductor.org/packages/3.17/${_pkgname}"
license=('MIT')
depends=(
r
r-biobase
r-biocparallel
r-dplyr
r-genomicranges
r-gplots
r-iranges
r-lazyeval
r-magrittr
r-matrixstats
r-nmf
r-rtracklayer
r-s4vectors
r-tidyr
)
optdepends=(
r-biocstyle
r-desctools
r-devtools
r-genomeinfodb
r-knitr
r-mclust
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/3.17/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('0736f76aed1d4d1200f14701c62d0bc965a9a51b6bc03b86927742801252fc00')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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