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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=circRNAprofiler
_pkgver=1.20.0
pkgname=r-${_pkgname,,}
pkgver=1.20.0
pkgrel=1
pkgdesc='circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationhub
r-biostrings
r-bsgenome
r-bsgenome.hsapiens.ucsc.hg19
r-deseq2
r-dplyr
r-edger
r-genomeinfodb
r-genomicranges
r-ggplot2
r-gwascat
r-iranges
r-magrittr
r-r.utils
r-readr
r-reshape2
r-rlang
r-rtracklayer
r-s4vectors
r-seqinr
r-stringi
r-stringr
r-universalmotif
)
optdepends=(
r-biocmanager
r-bsgenome.hsapiens.ucsc.hg38
r-bsgenome.mmusculus.ucsc.mm10
r-bsgenome.mmusculus.ucsc.mm9
r-devtools
r-ggpubr
r-gridextra
r-knitr
r-rmarkdown
r-roxygen2
r-testthat
r-venndiagram
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('cb94795e70b97f9d4d4d4b3c747cb7c4f602f2f50eeb3095fa6d25f82bd05f7b')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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