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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=clusterExperiment
_pkgver=2.24.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Compare Clusterings for Single-Cell Sequencing"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-ape
r-biocgenerics
r-biocsingular
r-delayedarray
r-edger
r-hdf5array
r-kernlab
r-limma
r-locfdr
r-matrixstats
r-mbkmeans
r-nmf
r-phylobase
r-pracma
r-rcolorbrewer
r-rcpp
r-s4vectors
r-scales
r-singlecellexperiment
r-stringr
r-summarizedexperiment
r-zinbwave
)
optdepends=(
r-biocstyle
r-igraph
r-knitr
r-mast
r-rmarkdown
r-rtsne
r-scran
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8f4b47c858e29c983f416a178be37a48')
b2sums=('dd43b3dfb70a26a8bd7f1a11eec6af989393cd76e38d51b67709438fc1400996cc1506d492894b1ffe7d728c6447cbf2f786ba56593fc2793d29e3763fca8a1a')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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