PKGBUILD


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39

# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=cpvSNP
_pkgver=1.38.0
pkgname=r-${_pkgname,,}
pkgver=1.38.0
pkgrel=1
pkgdesc='Gene set analysis methods for SNP association p-values that lie in genes in given gene sets'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
  r
  r-biocparallel
  r-corpcor
  r-genomicfeatures
  r-ggplot2
  r-gseabase
  r-plyr
)
optdepends=(
  r-biocgenerics
  r-biocstyle
  r-reportingtools
  r-runit
  r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('8a3ae165cd9712a4a87e8e3bde366c6f6028871b651548f5c55f9621ef9b0a63')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: