blob: 3f6016a4be8bd7d8189c5828d03a05ff50ec11d7 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=customProDB
_pkgver=1.46.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-ahocorasicktrie
r-annotationdbi
r-biomart
r-biostrings
r-dbi
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-iranges
r-plyr
r-rcurl
r-rsamtools
r-rsqlite
r-rtracklayer
r-s4vectors
r-stringr
r-txdbmaker
r-variantannotation
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg19
r-rmariadb
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('546d4b85686b7f4786e4d765ee96eb44')
b2sums=('0d2ab2e13cb6883455dd26c09b8cf0aece003810db080d83d224dec4b0e1f9beb12f44736c358309e6468cb872cbde1e56de9999cc7f5490d0cf74f1d6433f09')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|