PKGBUILD


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# Maintainer: peippo <christoph+aur@christophfink.com>
# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
# Contributor: Grey Christoforo <first name at last name dot net>

_bcname=dada2
_bcver=1.30.0
pkgname=r-${_bcname,,}
pkgver=${_bcver//[:-]/.}
pkgrel=1
pkgdesc="Accurate, high-resolution sample inference from amplicon sequencing data"
arch=(i686 x86_64)
url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
license=(LGPL2)
depends=(
	"r>=3.4.0"
	"r-biocgenerics>=0.22.0"
	"r-biostrings>=2.42.1"
	"r-ggplot2>=2.1.0"
	"r-iranges>=2.6.0"
	"r-rcpp>=0.12.0"
	"r-rcppparallel>=4.3.0"
	"r-reshape2>=1.4.1"
	"r-shortread>=1.32.0"
	"r-xvector>=0.16.0"
)
makedepends=(make)
optdepends=(
    r-biocstyle
	r-knitr
	r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
sha256sums=("c6653fe77c3d62dd91207bbbf6641ec143fb8a498967e240a97af26de7e27667")

build() {
  R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"

  if [[ -f "${_bcname}/LICENSE" ]]; then
    install -Dm0644 "${_bcname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
  fi
}