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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=DEXSeq
_pkgver=1.54.0
pkgname=r-${_pkgname,,}
pkgver=1.54.0
pkgrel=1
pkgdesc='Inference of differential exon usage in RNA-Seq'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationdbi
r-biobase
r-biocgenerics
r-biocparallel
r-biomart
r-deseq2
r-genefilter
r-geneplotter
r-genomicranges
r-hwriter
r-iranges
r-rcolorbrewer
r-rsamtools
r-s4vectors
r-statmod
r-stringr
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-genomicalignments
r-genomicfeatures
r-glmgampoi
r-knitr
r-parathyroidse
r-pasilla
r-pasillabamsubset
r-rmarkdown
r-roxygen2
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e17ca088129e3a786eb50eb7f563b08100123f7cec48166f1342ff9e344028a3')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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