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# system requirements: C++14
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=DIAlignR
_pkgver=2.12.0
pkgname=r-${_pkgname,,}
pkgver=2.12.0
pkgrel=1
pkgdesc='Dynamic Programming Based Alignment of MS2 Chromatograms'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-ape
r-bit64
r-data.table
r-dbi
r-dplyr
r-ggplot2
r-magrittr
r-mzr
r-phangorn
r-pracma
r-rcpp
r-rcppeigen
r-reticulate
r-rlang
r-rmsnumpress
r-rsqlite
r-signal
r-tidyr
r-zoo
gcc
)
optdepends=(
r-akima
r-biocparallel
r-biocstyle
r-gridextra
r-knitr
r-lattice
r-latticeextra
r-rmarkdown
r-scales
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a55687d3bc0c33404908bd98f3907ca15547f8a00e14c76e02bd4b9d9a95efa7')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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