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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=DifferentialRegulation
_pkgver=2.2.2
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Differentially regulated genes from scRNA-seq data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
blas
lapack
r-bandits
r-data.table
r-doparallel
r-dorng
r-foreach
r-ggplot2
r-gridextra
r-rcpp
r-singlecellexperiment
r-summarizedexperiment
r-tximport
)
makedepends=(
r-rcpparmadillo
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('80c8eba205fb46f3f76e16812b7988d2')
b2sums=('60f0ad667d2a4be1c9047b52fe42ba9cd1a4d4497b3a3eec6272c3ba7b65c1f0a79b0e314f1578149eb5a2e8e912ae80d47731d8ac3ee30cee2ef38c3da0a237')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testhat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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