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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=DMRcate
_pkgver=3.0.10
pkgname=r-${_pkgname,,}
pkgver=3.0.10
pkgrel=1
pkgdesc='Methylation array and sequencing spatial analysis methods'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('custom')
depends=(
r
r-biomart
r-bsseq
r-dss
r-edger
r-experimenthub
r-genomeinfodb
r-genomicranges
r-gviz
r-iranges
r-limma
r-minfi
r-missmethyl
r-plyr
r-s4vectors
r-summarizedexperiment
)
optdepends=(
r-biocgenerics
r-dmrcatedata
r-flowsorted.blood.epic
r-illuminahumanmethylation450kanno.ilmn12.hg19
r-illuminahumanmethylationepicanno.ilm10b4.hg19
r-knitr
r-runit
r-tissuetreg
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('dd7f12106bb2dbfeb00329ed60eb0847cc112e2bd3e97bc29464e82508a6a3b2')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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