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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=DOSE
_pkgver=3.30.5
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Disease Ontology Semantic and Enrichment analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-biocparallel
r-fgsea
r-ggplot2
r-gosemsim
r-qvalue
r-reshape2
)
optdepends=(
r-clusterprofiler
r-gson
r-knitr
r-org.hs.eg.db
r-prettydoc
r-rmarkdown
r-testthat
r-yulab.utils
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('c088745a06548ae5b7a2ccd902cbb765')
b2sums=('b089f53cb7817727bfa91d89ab02deabe9f0e07bf85bdcfd24361b938212b3b2009211d42305c0b8d6428f844c917d51e9cc955a9d95602107987554dc9e9129')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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