blob: db8e596401954b261967ab682f7e75a0b0274038 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=easyRNASeq
_pkgver=2.40.1
pkgname=r-${_pkgname,,}
pkgver=2.40.1
pkgrel=1
pkgdesc='Count summarization and normalization for RNA-Seq data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biobase
r-biocfilecache
r-biocgenerics
r-biocparallel
r-biomart
r-biostrings
r-edger
r-genomeinfodb
r-genomeintervals
r-genomicalignments
r-genomicranges
r-iranges
r-locfit
r-lsd
r-rappdirs
r-rsamtools
r-s4vectors
r-shortread
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-bsgenome
r-bsgenome.dmelanogaster.ucsc.dm3
r-curl
r-knitr
r-rmarkdown
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('7de948c6097dfeeb1add57ac13f5b7f26ed1f1dbde6094cec74aafefad7966c8')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|