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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=edgeR
_pkgver=4.4.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Empirical Analysis of Digital Gene Expression Data in R"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
blas
lapack
r-limma
r-locfit
)
optdepends=(
r-annotationdbi
r-biobase
r-biocstyle
r-jsonlite
r-knitr
r-org.hs.eg.db
r-readr
r-rhdf5
r-seuratobject
r-summarizedexperiment
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('cb9ead4c16515508ce0e2d91a7286b80')
b2sums=('5d2a7e7bd3c634df8bd4b73973ca266df16ad2f19d1717c39960136023bf04ed5606be065c2f8d69f832e120f1fabd0b329ced36ba93d21d111e1f843b16c19e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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