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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ELMER
_pkgver=2.30.0
pkgname=r-${_pkgname,,}
pkgver=2.30.0
pkgrel=1
pkgdesc='Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biomart
r-circlize
r-complexheatmap
r-delayedarray
r-doparallel
r-downloader
r-dplyr
r-elmer.data
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-ggpubr
r-ggrepel
r-gridextra
r-gviz
r-iranges
r-magrittr
r-multiassayexperiment
r-plotly
r-plyr
r-progress
r-purrr
r-readr
r-reshape
r-reshape2
r-rmarkdown
r-rtracklayer
r-rvest
r-s4vectors
r-scales
r-stringr
r-summarizedexperiment
r-tcgabiolinks
r-tibble
r-tidyr
r-xml2
)
optdepends=(
r-annotationhub
r-biocstyle
r-covr
r-data.table
r-dt
r-experimenthub
r-genomicinteractions
r-knitr
r-r.utils
r-sesamedata
r-testthat
r-webshot
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('18b0f782ea9fb3cd35d37144ccebec2b000fa0b4539cd83eb7c6bcc45ed8fb8a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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