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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ENmix
_pkgver=1.42.2
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Quality control and analysis tools for Illumina DNA methylation BeadChip"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationhub
r-biobase
r-doparallel
r-dynamictreecut
r-experimenthub
r-foreach
r-genefilter
r-geneplotter
r-gplots
r-gtools
r-illuminaio
r-impute
r-iranges
r-irlba
r-matrixstats
r-minfi
r-quadprog
r-rpmm
r-s4vectors
r-summarizedexperiment
)
checkdepends=(
r-biocgenerics
r-minfidata
r-runit
)
optdepends=(
r-biocgenerics
r-biocstyle
r-knitr
r-minfidata
r-rmarkdown
r-runit
)
source=("https://www.bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('dfc2fd60884b445f84c3bb5f906ea9bd')
b2sums=('91d4b11618987ac55fe59915a7e8ee3c1aa80a1380b3c91e9531090e965fe07ba98a7c30c8f38741efa3849394e854ba1cf2a2b56cc349190dbbea5c54b93e92')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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