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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=EpiTxDb
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Storing and accessing epitranscriptomic information using the AnnotationDbi interface"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-biocfilecache
r-biocgenerics
r-biostrings
r-curl
r-dbi
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-httr
r-iranges
r-modstrings
r-rex
r-rsqlite
r-s4vectors
r-trnadbimport
r-txdbmaker
r-xml2
)
optdepends=(
r-annotationhub
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg38
r-bsgenome.scerevisiae.ucsc.saccer3
r-ensembldb
r-epitxdb.hs.hg38
r-ggplot2
r-httptest
r-knitr
r-rmarkdown
r-testthat
r-txdb.hsapiens.ucsc.hg38.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('9eaa3d39c3126909d669fd4e98b76ac7')
b2sums=('5d3c367e70bf1c060bcd1d88788a400c970afdeb0677c49a238235567bb5b21347c5c69ca7b58ab06fdf8089968675042cf5b9a4eee2987631ea852c7e016e74')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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