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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=esATAC
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=1.26.0
pkgrel=1
pkgdesc='An Easy-to-use Systematic pipeline for ATACseq data analysis'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
gcc
r
r-annotationdbi
r-biocgenerics
r-biocmanager
r-biostrings
r-bsgenome
r-chipseeker
r-clusterprofiler
r-corrplot
r-digest
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-igraph
r-iranges
r-jaspar2018
r-knitr
r-magrittr
r-motifmatchr
r-pipeframe
r-r.utils
r-rbowtie2
r-rcpp
r-rjava
r-rmarkdown
r-rsamtools
r-rtracklayer
r-s4vectors
r-shortread
r-tfbstools
r-venndiagram
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg19
r-org.hs.eg.db
r-prettydoc
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
r-webshot
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('fa20cb9c726ccfe0e95433f85c3486e7d929c05e267096c4847f15f64fa1d13d')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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