blob: 3126be8c194ba5dd1d0c83898b49f4fd8968622d (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=EventPointer
_pkgver=3.12.0
pkgname=r-${_pkgname,,}
pkgver=3.12.0
pkgrel=1
pkgdesc='An effective identification of alternative splicing events using junction arrays and RNA-Seq data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-abind
r-affxparser
r-biostrings
r-bsgenome
r-cobs
r-doparallel
r-fgsea
r-foreach
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-glmnet
r-graph
r-igraph
r-iranges
r-iterators
r-limma
r-lpsolve
r-matrixstats
r-nnls
r-poibin
r-prodlim
r-qvalue
r-rbgl
r-rhdf5
r-s4vectors
r-sgseq
r-speedglm
r-stringr
r-summarizedexperiment
r-tximport
)
optdepends=(
r-biocgenerics
r-biocstyle
r-dplyr
r-kableextra
r-knitr
r-rmarkdown
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('11dcf8dc8c9d3ad63ecba27843a53174a767254ae55b67416d720ece6fd223b4')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|