blob: 52b267b49274e80e50022e3ecb119399a03cb102 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=fcoex
_pkgver=1.13.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=2
pkgdesc="FCBF-based Co-Expression Networks for Single Cells"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-clusterprofiler
r-data.table
r-dplyr
r-fcbf
r-ggplot2
r-ggrepel
r-igraph
r-intergraph
r-network
r-pathwaypca
r-progress
r-scales
r-singlecellexperiment
r-sna
r-stringr
)
optdepends=(
r-biocmanager
r-devtools
r-gridextra
r-knitr
r-rmarkdown
r-scater
r-schex
r-scran
r-seurat
r-tenxpbmcdata
r-testthat
)
source=("https://bioconductor.org/packages/3.17/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('51dd0d01307faed7bae46f54e5fb7fa5')
b2sums=('ee991ee5cc1c9a453240e609699fb85cc1176ded92d0b59a6d6a167f98b4f964e4e689fc49c438e435fc53759a34881d5e58d5793e1b6b577e3db9c40e796200')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|