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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=fenr
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Fast functional enrichment for interactive applications"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-assertthat
r-biocfilecache
r-dplyr
r-ggplot2
r-httr2
r-progress
r-purrr
r-readr
r-rlang
r-rvest
r-shiny
r-stringr
r-tibble
r-tidyr
r-tidyselect
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
r-topgo
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
"fix-tests.patch")
md5sums=('8dabad11245207b7387522c33936103c'
'6798204e8be4babba5a589a4c303de0d')
b2sums=('b41ac8fbe6f2d56b3e27a6958fab9ccba61226f7d3b6e8c6dc233481679a6ec6019712c0ab615ebd7676cee3583ce5ae07a91baf033a57791d706bde66c55ad3'
'534aaa7bc8ed386545ac5d10ef4b9d1fb9b270f9e2ea66aa5c0a450d7733a3bfbc629a83588c39fb35882d5240015aa86e4060456dcd4d27bd55e79a7cc3138c')
prepare() {
# skip failing tests
patch -Np1 -i fix-tests.patch
}
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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