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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=gDR
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Umbrella package for R packages in the gDR suite"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-gdrcore
r-gdrimport
r-gdrutils
)
checkdepends=(
r-gdrtestdata
r-testthat
)
optdepends=(
r-biocstyle
r-bumpymatrix
r-futile.logger
r-gdrstyle
r-gdrtestdata
r-kableextra
r-knitr
r-markdown
r-purrr
r-rmarkdown
r-summarizedexperiment
r-testthat
r-yaml
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6de07f2da08fbd189411399e6109f0a0')
b2sums=('15fd985b1fa26ec84d59a6ef9349439aeddc1d4a0f47b3a17277fd775d91eedbfec5a3dc13f4c836a4c2ed28991c3061749378c5e2776cb4f288e1452d9e179c')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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