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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=gDRimport
_pkgver=1.4.6
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Package for handling the import of dose-response data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-assertthat
r-bumpymatrix
r-checkmate
r-coregx
r-data.table
r-futile.logger
r-gdrutils
r-magrittr
r-multiassayexperiment
r-openxlsx
r-pharmacogx
r-readxl
r-rio
r-s4vectors
r-stringi
r-summarizedexperiment
r-tibble
r-xml
r-yaml
)
checkdepends=(
r-qs
r-testthat
)
optdepends=(
r-biocstyle
r-gdrstyle
r-gdrtestdata
r-knitr
r-purrr
r-qs
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e7684bf471c0d00071e1c5ec08ec6885')
b2sums=('509bdb27d36160574bbcf3a827f3af57f8fc1148dd267ac413879a3287e61dba76f0703d12d06d65108079380c24c03067f8405188151850ac44cb1d90adc764')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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